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LINC02116 (long intergenic non-protein coding RNA 2116)

Identity

Other alias-
HGNC (Hugo) LINC02116
LocusID (NCBI) 101929034
Atlas_Id 79809
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 1855970 and ends at 1856568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02116   52971
Cards
Entrez_Gene (NCBI)LINC02116  101929034  long intergenic non-protein coding RNA 2116
Aliases
GeneCards (Weizmann)LINC02116
Ensembl hg19 (Hinxton)ENSG00000250417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250417 [Gene_View]  ENSG00000250417 [Sequence]  chr5:1855970-1856568 [Contig_View]  LINC02116 [Vega]
ICGC DataPortalENSG00000250417
TCGA cBioPortalLINC02116
AceView (NCBI)LINC02116
Genatlas (Paris)LINC02116
WikiGenes101929034
SOURCE (Princeton)LINC02116
Genetics Home Reference (NIH)LINC02116
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02116  -     chr5:1855970-1856568 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02116  -     5p15.33   [Description]    (hg19-Feb_2009)
LINC02116 - 5p15.33 [CytoView hg19]  LINC02116 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBILINC02116 [Mapview hg19]  LINC02116 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI968221 BX096909
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02116
Cluster EST : UnigeneHs.128032 [ NCBI ]
CGAP (NCI)Hs.128032
Alternative Splicing GalleryENSG00000250417
Gene ExpressionLINC02116 [ NCBI-GEO ]   LINC02116 [ EBI - ARRAY_EXPRESS ]   LINC02116 [ SEEK ]   LINC02116 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02116 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929034
GTEX Portal (Tissue expression)LINC02116
Human Protein AtlasENSG00000250417-LINC02116 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02116
DMDM Disease mutations101929034
Blocks (Seattle)LINC02116
Human Protein Atlas [tissue]ENSG00000250417-LINC02116 [tissue]
Protein Interaction databases
FunCoupENSG00000250417
BioGRIDLINC02116
STRING (EMBL)LINC02116
ZODIACLINC02116
Ontologies - Pathways
Huge Navigator LINC02116 [HugePedia]
snp3D : Map Gene to Disease101929034
BioCentury BCIQLINC02116
ClinGenLINC02116
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929034
Clinical trialLINC02116
Miscellaneous
canSAR (ICR)LINC02116 (select the gene name)
DataMed IndexLINC02116
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02116
EVEXLINC02116
GoPubMedLINC02116
iHOPLINC02116
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:50 CEST 2019

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