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LINC02138 (long intergenic non-protein coding RNA 2138)

Identity

Other alias-
HGNC (Hugo) LINC02138
LocusID (NCBI) 400558
Atlas_Id 79038
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89166383 and ends at 89169147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02138   52998
Cards
Entrez_Gene (NCBI)LINC02138  400558  long intergenic non-protein coding RNA 2138
Aliases
GeneCards (Weizmann)LINC02138
Ensembl hg19 (Hinxton)ENSG00000205015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205015 [Gene_View]  chr16:89166383-89169147 [Contig_View]  LINC02138 [Vega]
ICGC DataPortalENSG00000205015
TCGA cBioPortalLINC02138
AceView (NCBI)LINC02138
Genatlas (Paris)LINC02138
WikiGenes400558
SOURCE (Princeton)LINC02138
Genetics Home Reference (NIH)LINC02138
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02138  -     chr16:89166383-89169147 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02138  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02138 - 16q24.3 [CytoView hg19]  LINC02138 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBILINC02138 [Mapview hg19]  LINC02138 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130578
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02138
Cluster EST : UnigeneHs.513818 [ NCBI ]
CGAP (NCI)Hs.513818
Alternative Splicing GalleryENSG00000205015
Gene ExpressionLINC02138 [ NCBI-GEO ]   LINC02138 [ EBI - ARRAY_EXPRESS ]   LINC02138 [ SEEK ]   LINC02138 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02138 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400558
GTEX Portal (Tissue expression)LINC02138
Human Protein AtlasENSG00000205015-LINC02138 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02138
DMDM Disease mutations400558
Blocks (Seattle)LINC02138
Human Protein Atlas [tissue]ENSG00000205015-LINC02138 [tissue]
IPIIPI00442524   
Protein Interaction databases
FunCoupENSG00000205015
BioGRIDLINC02138
STRING (EMBL)LINC02138
ZODIACLINC02138
Ontologies - Pathways
Huge Navigator LINC02138 [HugePedia]
snp3D : Map Gene to Disease400558
BioCentury BCIQLINC02138
ClinGenLINC02138
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400558
Clinical trialLINC02138
Miscellaneous
canSAR (ICR)LINC02138 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02138
EVEXLINC02138
GoPubMedLINC02138
iHOPLINC02138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:33 CET 2017

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