Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02140 (long intergenic non-protein coding RNA 2140)

Identity

Other alias-
HGNC (Hugo) LINC02140
LocusID (NCBI) 100996345
Atlas_Id 80236
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 54366007 and ends at 54370458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02140   53000
Cards
Entrez_Gene (NCBI)LINC02140  100996345  long intergenic non-protein coding RNA 2140
Aliases
GeneCards (Weizmann)LINC02140
Ensembl hg19 (Hinxton)ENSG00000261803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261803 [Gene_View]  chr16:54366007-54370458 [Contig_View]  LINC02140 [Vega]
ICGC DataPortalENSG00000261803
TCGA cBioPortalLINC02140
AceView (NCBI)LINC02140
Genatlas (Paris)LINC02140
WikiGenes100996345
SOURCE (Princeton)LINC02140
Genetics Home Reference (NIH)LINC02140
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02140  -     chr16:54366007-54370458 -  16q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02140  -     16q12.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02140 - 16q12.2 [CytoView hg19]  LINC02140 - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBILINC02140 [Mapview hg19]  LINC02140 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057319 DB447763 HY020479
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02140
Cluster EST : UnigeneHs.112680 [ NCBI ]
CGAP (NCI)Hs.112680
Alternative Splicing GalleryENSG00000261803
Gene ExpressionLINC02140 [ NCBI-GEO ]   LINC02140 [ EBI - ARRAY_EXPRESS ]   LINC02140 [ SEEK ]   LINC02140 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02140 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996345
GTEX Portal (Tissue expression)LINC02140
Human Protein AtlasENSG00000261803-LINC02140 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02140
DMDM Disease mutations100996345
Blocks (Seattle)LINC02140
Human Protein Atlas [tissue]ENSG00000261803-LINC02140 [tissue]
Protein Interaction databases
FunCoupENSG00000261803
BioGRIDLINC02140
STRING (EMBL)LINC02140
ZODIACLINC02140
Ontologies - Pathways
Huge Navigator LINC02140 [HugePedia]
snp3D : Map Gene to Disease100996345
BioCentury BCIQLINC02140
ClinGenLINC02140
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996345
Clinical trialLINC02140
Miscellaneous
canSAR (ICR)LINC02140 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02140
EVEXLINC02140
GoPubMedLINC02140
iHOPLINC02140
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:33 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.