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LINC02143 (long intergenic non-protein coding RNA 2143)

Identity

Other alias-
HGNC (Hugo) LINC02143
LocusID (NCBI) 101927835
Atlas_Id 79072
Location 5q34  [Link to chromosome band 5q34]
Location_base_pair Starts at 164448422 and ends at 164467402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02143   53003
Cards
Entrez_Gene (NCBI)LINC02143  101927835  long intergenic non-protein coding RNA 2143
Aliases
GeneCards (Weizmann)LINC02143
Ensembl hg19 (Hinxton)ENSG00000253236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253236 [Gene_View]  ENSG00000253236 [Sequence]  chr5:164448422-164467402 [Contig_View]  LINC02143 [Vega]
ICGC DataPortalENSG00000253236
TCGA cBioPortalLINC02143
AceView (NCBI)LINC02143
Genatlas (Paris)LINC02143
WikiGenes101927835
SOURCE (Princeton)LINC02143
Genetics Home Reference (NIH)LINC02143
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02143  -     chr5:164448422-164467402 -  5q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02143  -     5q34   [Description]    (hg19-Feb_2009)
EnsemblLINC02143 - 5q34 [CytoView hg19]  LINC02143 - 5q34 [CytoView hg38]
Mapping of homologs : NCBILINC02143 [Mapview hg19]  LINC02143 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW182569
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02143
Cluster EST : UnigeneHs.735171 [ NCBI ]
CGAP (NCI)Hs.735171
Alternative Splicing GalleryENSG00000253236
Gene ExpressionLINC02143 [ NCBI-GEO ]   LINC02143 [ EBI - ARRAY_EXPRESS ]   LINC02143 [ SEEK ]   LINC02143 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02143 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927835
GTEX Portal (Tissue expression)LINC02143
Human Protein AtlasENSG00000253236-LINC02143 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02143
DMDM Disease mutations101927835
Blocks (Seattle)LINC02143
Human Protein Atlas [tissue]ENSG00000253236-LINC02143 [tissue]
Protein Interaction databases
FunCoupENSG00000253236
BioGRIDLINC02143
STRING (EMBL)LINC02143
ZODIACLINC02143
Ontologies - Pathways
Huge Navigator LINC02143 [HugePedia]
snp3D : Map Gene to Disease101927835
BioCentury BCIQLINC02143
ClinGenLINC02143
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927835
Clinical trialLINC02143
Miscellaneous
canSAR (ICR)LINC02143 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02143
EVEXLINC02143
GoPubMedLINC02143
iHOPLINC02143
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:02 CEST 2018

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