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LINC02145 (long intergenic non-protein coding RNA 2145)

Identity

Other alias-
HGNC (Hugo) LINC02145
LocusID (NCBI) 401172
Atlas_Id 80019
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 6310441 and ends at 6337292 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02145   53005
Cards
Entrez_Gene (NCBI)LINC02145  401172  long intergenic non-protein coding RNA 2145
Aliases
GeneCards (Weizmann)LINC02145
Ensembl hg19 (Hinxton)ENSG00000250490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250490 [Gene_View]  ENSG00000250490 [Sequence]  chr5:6310441-6337292 [Contig_View]  LINC02145 [Vega]
ICGC DataPortalENSG00000250490
TCGA cBioPortalLINC02145
AceView (NCBI)LINC02145
Genatlas (Paris)LINC02145
WikiGenes401172
SOURCE (Princeton)LINC02145
Genetics Home Reference (NIH)LINC02145
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02145  -     chr5:6310441-6337292 -  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02145  -     5p15.31   [Description]    (hg19-Feb_2009)
EnsemblLINC02145 - 5p15.31 [CytoView hg19]  LINC02145 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBILINC02145 [Mapview hg19]  LINC02145 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090679 BC132707 BC132709
RefSeq transcript (Entrez)NM_001001702
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02145
Cluster EST : UnigeneHs.376760 [ NCBI ]
CGAP (NCI)Hs.376760
Alternative Splicing GalleryENSG00000250490
Gene ExpressionLINC02145 [ NCBI-GEO ]   LINC02145 [ EBI - ARRAY_EXPRESS ]   LINC02145 [ SEEK ]   LINC02145 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02145 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401172
GTEX Portal (Tissue expression)LINC02145
Human Protein AtlasENSG00000250490-LINC02145 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02145
DMDM Disease mutations401172
Blocks (Seattle)LINC02145
Human Protein Atlas [tissue]ENSG00000250490-LINC02145 [tissue]
IPIIPI00419635   
Protein Interaction databases
FunCoupENSG00000250490
BioGRIDLINC02145
STRING (EMBL)LINC02145
ZODIACLINC02145
Ontologies - Pathways
Huge Navigator LINC02145 [HugePedia]
snp3D : Map Gene to Disease401172
BioCentury BCIQLINC02145
ClinGenLINC02145
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401172
Chemical/Pharm GKB GenePA162411085
Clinical trialLINC02145
Miscellaneous
canSAR (ICR)LINC02145 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02145
EVEXLINC02145
GoPubMedLINC02145
iHOPLINC02145
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:03 CEST 2018

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