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LINC02147 (long intergenic non-protein coding RNA 2147)

Identity

Other alias-
HGNC (Hugo) LINC02147
LocusID (NCBI) 102467224
Atlas_Id 79745
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 117730361 and ends at 118266062 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02147   53007
Cards
Entrez_Gene (NCBI)LINC02147  102467224  long intergenic non-protein coding RNA 2147
Aliases
GeneCards (Weizmann)LINC02147
Ensembl hg19 (Hinxton)ENSG00000249797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249797 [Gene_View]  ENSG00000249797 [Sequence]  chr5:117730361-118266062 [Contig_View]  LINC02147 [Vega]
ICGC DataPortalENSG00000249797
TCGA cBioPortalLINC02147
AceView (NCBI)LINC02147
Genatlas (Paris)LINC02147
WikiGenes102467224
SOURCE (Princeton)LINC02147
Genetics Home Reference (NIH)LINC02147
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02147  -     chr5:117730361-118266062 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02147  -     5q23.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02147 - 5q23.1 [CytoView hg19]  LINC02147 - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBILINC02147 [Mapview hg19]  LINC02147 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG207158 BX098718 HY050818
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02147
Cluster EST : UnigeneHs.582522 [ NCBI ]
CGAP (NCI)Hs.582522
Alternative Splicing GalleryENSG00000249797
Gene ExpressionLINC02147 [ NCBI-GEO ]   LINC02147 [ EBI - ARRAY_EXPRESS ]   LINC02147 [ SEEK ]   LINC02147 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02147 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467224
GTEX Portal (Tissue expression)LINC02147
Human Protein AtlasENSG00000249797-LINC02147 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02147
DMDM Disease mutations102467224
Blocks (Seattle)LINC02147
Human Protein Atlas [tissue]ENSG00000249797-LINC02147 [tissue]
Protein Interaction databases
FunCoupENSG00000249797
BioGRIDLINC02147
STRING (EMBL)LINC02147
ZODIACLINC02147
Ontologies - Pathways
Huge Navigator LINC02147 [HugePedia]
snp3D : Map Gene to Disease102467224
BioCentury BCIQLINC02147
ClinGenLINC02147
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467224
Clinical trialLINC02147
Miscellaneous
canSAR (ICR)LINC02147 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02147
EVEXLINC02147
GoPubMedLINC02147
iHOPLINC02147
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:03 CEST 2018

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