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LINC02148 (long intergenic non-protein coding RNA 2148)

Identity

Other aliasHNCAT21
HGNC (Hugo) LINC02148
LocusID (NCBI) 100505811
Atlas_Id 80165
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 118282574 and ends at 118284777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02148   53008
Cards
Entrez_Gene (NCBI)LINC02148  100505811  long intergenic non-protein coding RNA 2148
AliasesHNCAT21
GeneCards (Weizmann)LINC02148
Ensembl hg19 (Hinxton)ENSG00000250427 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250427 [Gene_View]  ENSG00000250427 [Sequence]  chr5:118282574-118284777 [Contig_View]  LINC02148 [Vega]
ICGC DataPortalENSG00000250427
TCGA cBioPortalLINC02148
AceView (NCBI)LINC02148
Genatlas (Paris)LINC02148
WikiGenes100505811
SOURCE (Princeton)LINC02148
Genetics Home Reference (NIH)LINC02148
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02148  -     chr5:118282574-118284777 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02148  -     5q23.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02148 - 5q23.1 [CytoView hg19]  LINC02148 - 5q23.1 [CytoView hg38]
ImmunoBaseENSG00000250427
Mapping of homologs : NCBILINC02148 [Mapview hg19]  LINC02148 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036254 BC044609
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02148
Cluster EST : UnigeneHs.369776 [ NCBI ]
CGAP (NCI)Hs.369776
Alternative Splicing GalleryENSG00000250427
Gene ExpressionLINC02148 [ NCBI-GEO ]   LINC02148 [ EBI - ARRAY_EXPRESS ]   LINC02148 [ SEEK ]   LINC02148 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02148 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505811
GTEX Portal (Tissue expression)LINC02148
Human Protein AtlasENSG00000250427-LINC02148 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02148
DMDM Disease mutations100505811
Blocks (Seattle)LINC02148
Human Protein Atlas [tissue]ENSG00000250427-LINC02148 [tissue]
Protein Interaction databases
FunCoupENSG00000250427
BioGRIDLINC02148
STRING (EMBL)LINC02148
ZODIACLINC02148
Ontologies - Pathways
Huge Navigator LINC02148 [HugePedia]
snp3D : Map Gene to Disease100505811
BioCentury BCIQLINC02148
ClinGenLINC02148
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505811
Clinical trialLINC02148
Miscellaneous
canSAR (ICR)LINC02148 (select the gene name)
DataMed IndexLINC02148
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02148
EVEXLINC02148
GoPubMedLINC02148
iHOPLINC02148
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:25:35 CEST 2019

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