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LINC02158 (long intergenic non-protein coding RNA 2158)

Identity

Other alias-
HGNC (Hugo) LINC02158
LocusID (NCBI) 729083
Atlas_Id 79640
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42770612 and ends at 42773634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02158   53019
Cards
Entrez_Gene (NCBI)LINC02158  729083  long intergenic non-protein coding RNA 2158
Aliases
GeneCards (Weizmann)LINC02158
Ensembl hg19 (Hinxton)ENSG00000225611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225611 [Gene_View]  ENSG00000225611 [Sequence]  chr3:42770612-42773634 [Contig_View]  LINC02158 [Vega]
ICGC DataPortalENSG00000225611
TCGA cBioPortalLINC02158
AceView (NCBI)LINC02158
Genatlas (Paris)LINC02158
WikiGenes729083
SOURCE (Princeton)LINC02158
Genetics Home Reference (NIH)LINC02158
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02158  -     chr3:42770612-42773634 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02158  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02158 - 3p22.1 [CytoView hg19]  LINC02158 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBILINC02158 [Mapview hg19]  LINC02158 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038366
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02158
Cluster EST : UnigeneHs.713395 [ NCBI ]
CGAP (NCI)Hs.713395
Alternative Splicing GalleryENSG00000225611
Gene ExpressionLINC02158 [ NCBI-GEO ]   LINC02158 [ EBI - ARRAY_EXPRESS ]   LINC02158 [ SEEK ]   LINC02158 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02158 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)729083
GTEX Portal (Tissue expression)LINC02158
Human Protein AtlasENSG00000225611-LINC02158 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02158
DMDM Disease mutations729083
Blocks (Seattle)LINC02158
Human Protein Atlas [tissue]ENSG00000225611-LINC02158 [tissue]
IPIIPI00791148   
Protein Interaction databases
FunCoupENSG00000225611
BioGRIDLINC02158
STRING (EMBL)LINC02158
ZODIACLINC02158
Ontologies - Pathways
Huge Navigator LINC02158 [HugePedia]
snp3D : Map Gene to Disease729083
BioCentury BCIQLINC02158
ClinGenLINC02158
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729083
Clinical trialLINC02158
Miscellaneous
canSAR (ICR)LINC02158 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02158
EVEXLINC02158
GoPubMedLINC02158
iHOPLINC02158
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:04 CEST 2018

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