Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02159 (long intergenic non-protein coding RNA 2159)

Identity

Other alias-
HGNC (Hugo) LINC02159
LocusID (NCBI) 285629
Atlas_Id 79098
Location 5q34  [Link to chromosome band 5q34]
Location_base_pair Starts at 160931779 and ends at 160938626 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02159   27749
Cards
Entrez_Gene (NCBI)LINC02159  285629  long intergenic non-protein coding RNA 2159
Aliases
GeneCards (Weizmann)LINC02159
Ensembl hg19 (Hinxton)ENSG00000253417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253417 [Gene_View]  ENSG00000253417 [Sequence]  chr5:160931779-160938626 [Contig_View]  LINC02159 [Vega]
ICGC DataPortalENSG00000253417
TCGA cBioPortalLINC02159
AceView (NCBI)LINC02159
Genatlas (Paris)LINC02159
WikiGenes285629
SOURCE (Princeton)LINC02159
Genetics Home Reference (NIH)LINC02159
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02159  -     chr5:160931779-160938626 -  5q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02159  -     5q34   [Description]    (hg19-Feb_2009)
GoldenPathLINC02159 - 5q34 [CytoView hg19]  LINC02159 - 5q34 [CytoView hg38]
ImmunoBaseENSG00000253417
Mapping of homologs : NCBILINC02159 [Mapview hg19]  LINC02159 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090625 AK097745 BM708011
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02159
Cluster EST : UnigeneHs.554279 [ NCBI ]
CGAP (NCI)Hs.554279
Alternative Splicing GalleryENSG00000253417
Gene ExpressionLINC02159 [ NCBI-GEO ]   LINC02159 [ EBI - ARRAY_EXPRESS ]   LINC02159 [ SEEK ]   LINC02159 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02159 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285629
GTEX Portal (Tissue expression)LINC02159
Human Protein AtlasENSG00000253417-LINC02159 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02159
DMDM Disease mutations285629
Blocks (Seattle)LINC02159
Human Protein Atlas [tissue]ENSG00000253417-LINC02159 [tissue]
Protein Interaction databases
FunCoupENSG00000253417
BioGRIDLINC02159
STRING (EMBL)LINC02159
ZODIACLINC02159
Ontologies - Pathways
Huge Navigator LINC02159 [HugePedia]
snp3D : Map Gene to Disease285629
BioCentury BCIQLINC02159
ClinGenLINC02159
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285629
Clinical trialLINC02159
Miscellaneous
canSAR (ICR)LINC02159 (select the gene name)
DataMed IndexLINC02159
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02159
EVEXLINC02159
GoPubMedLINC02159
iHOPLINC02159
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 12 16:23:16 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.