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LINC02162 (long intergenic non-protein coding RNA 2162)

Identity

Other alias-
HGNC (Hugo) LINC02162
LocusID (NCBI) 105374624
Atlas_Id 80182
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 3452816 and ends at 3461660 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02162   53023
Cards
Entrez_Gene (NCBI)LINC02162  105374624  long intergenic non-protein coding RNA 2162
Aliases
GeneCards (Weizmann)LINC02162
Ensembl hg19 (Hinxton)ENSG00000249830 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249830 [Gene_View]  ENSG00000249830 [Sequence]  chr5:3452816-3461660 [Contig_View]  LINC02162 [Vega]
ICGC DataPortalENSG00000249830
TCGA cBioPortalLINC02162
AceView (NCBI)LINC02162
Genatlas (Paris)LINC02162
WikiGenes105374624
SOURCE (Princeton)LINC02162
Genetics Home Reference (NIH)LINC02162
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02162  -     chr5:3452816-3461660 +  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02162  -     5p15.33   [Description]    (hg19-Feb_2009)
LINC02162 - 5p15.33 [CytoView hg19]  LINC02162 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBILINC02162 [Mapview hg19]  LINC02162 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB030232
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02162
Cluster EST : UnigeneHs.518991 [ NCBI ]
CGAP (NCI)Hs.518991
Alternative Splicing GalleryENSG00000249830
Gene ExpressionLINC02162 [ NCBI-GEO ]   LINC02162 [ EBI - ARRAY_EXPRESS ]   LINC02162 [ SEEK ]   LINC02162 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02162 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374624
GTEX Portal (Tissue expression)LINC02162
Human Protein AtlasENSG00000249830-LINC02162 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02162
DMDM Disease mutations105374624
Blocks (Seattle)LINC02162
Human Protein Atlas [tissue]ENSG00000249830-LINC02162 [tissue]
Protein Interaction databases
FunCoupENSG00000249830
BioGRIDLINC02162
STRING (EMBL)LINC02162
ZODIACLINC02162
Ontologies - Pathways
Huge Navigator LINC02162 [HugePedia]
snp3D : Map Gene to Disease105374624
BioCentury BCIQLINC02162
ClinGenLINC02162
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374624
Clinical trialLINC02162
Miscellaneous
canSAR (ICR)LINC02162 (select the gene name)
DataMed IndexLINC02162
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02162
EVEXLINC02162
GoPubMedLINC02162
iHOPLINC02162
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:55 CEST 2019

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