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LINC02169 (long intergenic non-protein coding RNA 2169)

Identity

Other alias-
HGNC (Hugo) LINC02169
LocusID (NCBI) 100996338
Atlas_Id 80176
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 54245546 and ends at 54270879 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02169   53031
Cards
Entrez_Gene (NCBI)LINC02169  100996338  long intergenic non-protein coding RNA 2169
Aliases
GeneCards (Weizmann)LINC02169
Ensembl hg19 (Hinxton)ENSG00000259517 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259517 [Gene_View]  chr16:54245546-54270879 [Contig_View]  LINC02169 [Vega]
ICGC DataPortalENSG00000259517
TCGA cBioPortalLINC02169
AceView (NCBI)LINC02169
Genatlas (Paris)LINC02169
WikiGenes100996338
SOURCE (Princeton)LINC02169
Genetics Home Reference (NIH)LINC02169
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02169  -     chr16:54245546-54270879 -  16q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02169  -     16q12.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02169 - 16q12.2 [CytoView hg19]  LINC02169 - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBILINC02169 [Mapview hg19]  LINC02169 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG201828 HY050027 HY055259 HY233965
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02169
Cluster EST : UnigeneHs.232014 [ NCBI ]
CGAP (NCI)Hs.232014
Alternative Splicing GalleryENSG00000259517
Gene ExpressionLINC02169 [ NCBI-GEO ]   LINC02169 [ EBI - ARRAY_EXPRESS ]   LINC02169 [ SEEK ]   LINC02169 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02169 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996338
GTEX Portal (Tissue expression)LINC02169
Human Protein AtlasENSG00000259517-LINC02169 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02169
DMDM Disease mutations100996338
Blocks (Seattle)LINC02169
Human Protein Atlas [tissue]ENSG00000259517-LINC02169 [tissue]
Protein Interaction databases
FunCoupENSG00000259517
BioGRIDLINC02169
STRING (EMBL)LINC02169
ZODIACLINC02169
Ontologies - Pathways
Huge Navigator LINC02169 [HugePedia]
snp3D : Map Gene to Disease100996338
BioCentury BCIQLINC02169
ClinGenLINC02169
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996338
Clinical trialLINC02169
Miscellaneous
canSAR (ICR)LINC02169 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02169
EVEXLINC02169
GoPubMedLINC02169
iHOPLINC02169
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:34 CET 2017

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