Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02170 (long intergenic non-protein coding RNA 2170)

Identity

Alias_symbol (synonym)PRCAT47
Other alias
HGNC (Hugo) LINC02170
LocusID (NCBI) 100996425
Atlas_Id 79387
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 80828735 and ends at 80892596 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02170   53032
Cards
Entrez_Gene (NCBI)LINC02170  100996425  long intergenic non-protein coding RNA 2170
AliasesPRCAT47
GeneCards (Weizmann)LINC02170
Ensembl hg19 (Hinxton)ENSG00000260896 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260896 [Gene_View]  chr16:80828735-80892596 [Contig_View]  LINC02170 [Vega]
ICGC DataPortalENSG00000260896
TCGA cBioPortalLINC02170
AceView (NCBI)LINC02170
Genatlas (Paris)LINC02170
WikiGenes100996425
SOURCE (Princeton)LINC02170
Genetics Home Reference (NIH)LINC02170
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02170  -     chr16:80828735-80892596 -  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02170  -     16q23.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02170 - 16q23.2 [CytoView hg19]  LINC02170 - 16q23.2 [CytoView hg38]
Mapping of homologs : NCBILINC02170 [Mapview hg19]  LINC02170 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA876610 AK093002 BG166652 BG171753 CR739737
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02170
Cluster EST : UnigeneHs.125350 [ NCBI ]
CGAP (NCI)Hs.125350
Alternative Splicing GalleryENSG00000260896
Gene ExpressionLINC02170 [ NCBI-GEO ]   LINC02170 [ EBI - ARRAY_EXPRESS ]   LINC02170 [ SEEK ]   LINC02170 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02170 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996425
GTEX Portal (Tissue expression)LINC02170
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02170
DMDM Disease mutations100996425
Blocks (Seattle)LINC02170
Human Protein AtlasENSG00000260896
Protein Interaction databases
FunCoupENSG00000260896
BioGRIDLINC02170
STRING (EMBL)LINC02170
ZODIACLINC02170
Ontologies - Pathways
Huge Navigator LINC02170 [HugePedia]
snp3D : Map Gene to Disease100996425
BioCentury BCIQLINC02170
ClinGenLINC02170
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996425
Clinical trialLINC02170
Miscellaneous
canSAR (ICR)LINC02170 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02170
EVEXLINC02170
GoPubMedLINC02170
iHOPLINC02170
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:15:58 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.