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LINC02171 (long intergenic non-protein coding RNA 2171)

Identity

Other alias-
HGNC (Hugo) LINC02171
LocusID (NCBI) 100133461
Atlas_Id 80177
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 3673593 and ends at 3677855 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02171   53033
Cards
Entrez_Gene (NCBI)LINC02171  100133461  long intergenic non-protein coding RNA 2171
Aliases
GeneCards (Weizmann)LINC02171
Ensembl hg19 (Hinxton)ENSG00000250632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250632 [Gene_View]  ENSG00000250632 [Sequence]  chr4:3673593-3677855 [Contig_View]  LINC02171 [Vega]
ICGC DataPortalENSG00000250632
TCGA cBioPortalLINC02171
AceView (NCBI)LINC02171
Genatlas (Paris)LINC02171
WikiGenes100133461
SOURCE (Princeton)LINC02171
Genetics Home Reference (NIH)LINC02171
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02171  -     chr4:3673593-3677855 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02171  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02171 - 4p16.3 [CytoView hg19]  LINC02171 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBILINC02171 [Mapview hg19]  LINC02171 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039423 BC042381
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02171
Cluster EST : UnigeneHs.554274 [ NCBI ]
CGAP (NCI)Hs.554274
Alternative Splicing GalleryENSG00000250632
Gene ExpressionLINC02171 [ NCBI-GEO ]   LINC02171 [ EBI - ARRAY_EXPRESS ]   LINC02171 [ SEEK ]   LINC02171 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02171 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100133461
GTEX Portal (Tissue expression)LINC02171
Human Protein AtlasENSG00000250632-LINC02171 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02171
DMDM Disease mutations100133461
Blocks (Seattle)LINC02171
Human Protein Atlas [tissue]ENSG00000250632-LINC02171 [tissue]
Protein Interaction databases
FunCoupENSG00000250632
BioGRIDLINC02171
STRING (EMBL)LINC02171
ZODIACLINC02171
Ontologies - Pathways
Huge Navigator LINC02171 [HugePedia]
snp3D : Map Gene to Disease100133461
BioCentury BCIQLINC02171
ClinGenLINC02171
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133461
Clinical trialLINC02171
Miscellaneous
canSAR (ICR)LINC02171 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02171
EVEXLINC02171
GoPubMedLINC02171
iHOPLINC02171
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:06 CEST 2018

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