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LINC02172 (long intergenic non-protein coding RNA 2172)

Identity

Other alias-
HGNC (Hugo) LINC02172
LocusID (NCBI) 105377443
Atlas_Id 79145
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 137545731 and ends at 137603430 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02172   53034
Cards
Entrez_Gene (NCBI)LINC02172  105377443  long intergenic non-protein coding RNA 2172
Aliases
GeneCards (Weizmann)LINC02172
Ensembl hg19 (Hinxton)ENSG00000251632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251632 [Gene_View]  ENSG00000251632 [Sequence]  chr4:137545731-137603430 [Contig_View]  LINC02172 [Vega]
ICGC DataPortalENSG00000251632
TCGA cBioPortalLINC02172
AceView (NCBI)LINC02172
Genatlas (Paris)LINC02172
WikiGenes105377443
SOURCE (Princeton)LINC02172
Genetics Home Reference (NIH)LINC02172
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02172  -     chr4:137545731-137603430 +  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02172  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02172 - 4q28.3 [CytoView hg19]  LINC02172 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBILINC02172 [Mapview hg19]  LINC02172 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA299236 U79300
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02172
Cluster EST : UnigeneHs.135587 [ NCBI ]
CGAP (NCI)Hs.135587
Alternative Splicing GalleryENSG00000251632
Gene ExpressionLINC02172 [ NCBI-GEO ]   LINC02172 [ EBI - ARRAY_EXPRESS ]   LINC02172 [ SEEK ]   LINC02172 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02172 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377443
GTEX Portal (Tissue expression)LINC02172
Human Protein AtlasENSG00000251632-LINC02172 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02172
DMDM Disease mutations105377443
Blocks (Seattle)LINC02172
Human Protein Atlas [tissue]ENSG00000251632-LINC02172 [tissue]
Protein Interaction databases
FunCoupENSG00000251632
BioGRIDLINC02172
STRING (EMBL)LINC02172
ZODIACLINC02172
Ontologies - Pathways
Huge Navigator LINC02172 [HugePedia]
snp3D : Map Gene to Disease105377443
BioCentury BCIQLINC02172
ClinGenLINC02172
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377443
Clinical trialLINC02172
Miscellaneous
canSAR (ICR)LINC02172 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02172
EVEXLINC02172
GoPubMedLINC02172
iHOPLINC02172
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:06 CEST 2018

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