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LINC02173 (long intergenic non-protein coding RNA 2173)

Identity

Other alias-
HGNC (Hugo) LINC02173
LocusID (NCBI) 105377355
Atlas_Id 79346
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 106433624 and ends at 106453447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02173   53035
Cards
Entrez_Gene (NCBI)LINC02173  105377355  long intergenic non-protein coding RNA 2173
Aliases
GeneCards (Weizmann)LINC02173
Ensembl hg19 (Hinxton)ENSG00000249613 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249613 [Gene_View]  ENSG00000249613 [Sequence]  chr4:106433624-106453447 [Contig_View]  LINC02173 [Vega]
ICGC DataPortalENSG00000249613
TCGA cBioPortalLINC02173
AceView (NCBI)LINC02173
Genatlas (Paris)LINC02173
WikiGenes105377355
SOURCE (Princeton)LINC02173
Genetics Home Reference (NIH)LINC02173
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02173  -     chr4:106433624-106453447 +  4q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02173  -     4q24   [Description]    (hg19-Feb_2009)
EnsemblLINC02173 - 4q24 [CytoView hg19]  LINC02173 - 4q24 [CytoView hg38]
Mapping of homologs : NCBILINC02173 [Mapview hg19]  LINC02173 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW195613
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02173
Cluster EST : UnigeneHs.253188 [ NCBI ]
CGAP (NCI)Hs.253188
Alternative Splicing GalleryENSG00000249613
Gene ExpressionLINC02173 [ NCBI-GEO ]   LINC02173 [ EBI - ARRAY_EXPRESS ]   LINC02173 [ SEEK ]   LINC02173 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02173 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377355
GTEX Portal (Tissue expression)LINC02173
Human Protein AtlasENSG00000249613-LINC02173 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02173
DMDM Disease mutations105377355
Blocks (Seattle)LINC02173
Human Protein Atlas [tissue]ENSG00000249613-LINC02173 [tissue]
Protein Interaction databases
FunCoupENSG00000249613
BioGRIDLINC02173
STRING (EMBL)LINC02173
ZODIACLINC02173
Ontologies - Pathways
Huge Navigator LINC02173 [HugePedia]
snp3D : Map Gene to Disease105377355
BioCentury BCIQLINC02173
ClinGenLINC02173
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377355
Clinical trialLINC02173
Miscellaneous
canSAR (ICR)LINC02173 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02173
EVEXLINC02173
GoPubMedLINC02173
iHOPLINC02173
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:06 CEST 2018

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