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LINC02177 (long intergenic non-protein coding RNA 2177)

Identity

Other alias-
HGNC (Hugo) LINC02177
LocusID (NCBI) 101927009
Atlas_Id 78896
Location 16p13.2  [Link to chromosome band 16p13]
Location_base_pair Starts at 9355588 and ends at 9408093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02177   53039
Cards
Entrez_Gene (NCBI)LINC02177  101927009  long intergenic non-protein coding RNA 2177
Aliases
GeneCards (Weizmann)LINC02177
Ensembl hg19 (Hinxton)ENSG00000261617 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261617 [Gene_View]  chr16:9355588-9408093 [Contig_View]  LINC02177 [Vega]
ICGC DataPortalENSG00000261617
TCGA cBioPortalLINC02177
AceView (NCBI)LINC02177
Genatlas (Paris)LINC02177
WikiGenes101927009
SOURCE (Princeton)LINC02177
Genetics Home Reference (NIH)LINC02177
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02177  -     chr16:9355588-9408093 +  16p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02177  -     16p13.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02177 - 16p13.2 [CytoView hg19]  LINC02177 - 16p13.2 [CytoView hg38]
Mapping of homologs : NCBILINC02177 [Mapview hg19]  LINC02177 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR749525
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02177
Cluster EST : UnigeneHs.537273 [ NCBI ]
CGAP (NCI)Hs.537273
Alternative Splicing GalleryENSG00000261617
Gene ExpressionLINC02177 [ NCBI-GEO ]   LINC02177 [ EBI - ARRAY_EXPRESS ]   LINC02177 [ SEEK ]   LINC02177 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02177 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927009
GTEX Portal (Tissue expression)LINC02177
Human Protein AtlasENSG00000261617-LINC02177 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02177
DMDM Disease mutations101927009
Blocks (Seattle)LINC02177
Human Protein Atlas [tissue]ENSG00000261617-LINC02177 [tissue]
Protein Interaction databases
FunCoupENSG00000261617
BioGRIDLINC02177
STRING (EMBL)LINC02177
ZODIACLINC02177
Ontologies - Pathways
Huge Navigator LINC02177 [HugePedia]
snp3D : Map Gene to Disease101927009
BioCentury BCIQLINC02177
ClinGenLINC02177
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927009
Clinical trialLINC02177
Miscellaneous
canSAR (ICR)LINC02177 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02177
EVEXLINC02177
GoPubMedLINC02177
iHOPLINC02177
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:34 CET 2017

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