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LINC02188 (long intergenic non-protein coding RNA 2188)

Identity

Other alias-
HGNC (Hugo) LINC02188
LocusID (NCBI) 102724344
Atlas_Id 79452
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 86722091 and ends at 86737826 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02188   53050
Cards
Entrez_Gene (NCBI)LINC02188  102724344  long intergenic non-protein coding RNA 2188
Aliases
GeneCards (Weizmann)LINC02188
Ensembl hg19 (Hinxton)ENSG00000261175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261175 [Gene_View]  chr16:86722091-86737826 [Contig_View]  LINC02188 [Vega]
ICGC DataPortalENSG00000261175
TCGA cBioPortalLINC02188
AceView (NCBI)LINC02188
Genatlas (Paris)LINC02188
WikiGenes102724344
SOURCE (Princeton)LINC02188
Genetics Home Reference (NIH)LINC02188
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02188  -     chr16:86722091-86737826 +  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02188  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02188 - 16q24.1 [CytoView hg19]  LINC02188 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBILINC02188 [Mapview hg19]  LINC02188 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB046859 DB057778
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02188
Cluster EST : UnigeneHs.585769 [ NCBI ]
CGAP (NCI)Hs.585769
Alternative Splicing GalleryENSG00000261175
Gene ExpressionLINC02188 [ NCBI-GEO ]   LINC02188 [ EBI - ARRAY_EXPRESS ]   LINC02188 [ SEEK ]   LINC02188 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02188 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724344
GTEX Portal (Tissue expression)LINC02188
Human Protein AtlasENSG00000261175-LINC02188 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02188
DMDM Disease mutations102724344
Blocks (Seattle)LINC02188
Human Protein Atlas [tissue]ENSG00000261175-LINC02188 [tissue]
Protein Interaction databases
FunCoupENSG00000261175
BioGRIDLINC02188
STRING (EMBL)LINC02188
ZODIACLINC02188
Ontologies - Pathways
Huge Navigator LINC02188 [HugePedia]
snp3D : Map Gene to Disease102724344
BioCentury BCIQLINC02188
ClinGenLINC02188
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724344
Clinical trialLINC02188
Miscellaneous
canSAR (ICR)LINC02188 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02188
EVEXLINC02188
GoPubMedLINC02188
iHOPLINC02188
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:36 CET 2017

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