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LINC02197 (long intergenic non-protein coding RNA 2197)

Identity

Other alias-
HGNC (Hugo) LINC02197
LocusID (NCBI) 102724392
Atlas_Id 78848
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 70352424 and ends at 70354499 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02197   53063
Cards
Entrez_Gene (NCBI)LINC02197  102724392  long intergenic non-protein coding RNA 2197
Aliases
GeneCards (Weizmann)LINC02197
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:70352424-70354499 [Contig_View]  LINC02197 [Vega]
TCGA cBioPortalLINC02197
AceView (NCBI)LINC02197
Genatlas (Paris)LINC02197
WikiGenes102724392
SOURCE (Princeton)LINC02197
Genetics Home Reference (NIH)LINC02197
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02197  -     chr5:70352424-70354499 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02197  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC02197 - 5q13.2 [CytoView hg19]  LINC02197 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBILINC02197 [Mapview hg19]  LINC02197 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123868 AK310013 CF141492 DA795384
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_187651 NW_003315917
Consensus coding sequences : CCDS (NCBI)LINC02197
Cluster EST : UnigeneHs.738640 [ NCBI ]
CGAP (NCI)Hs.738640
Gene ExpressionLINC02197 [ NCBI-GEO ]   LINC02197 [ EBI - ARRAY_EXPRESS ]   LINC02197 [ SEEK ]   LINC02197 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02197 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724392
GTEX Portal (Tissue expression)LINC02197
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02197
DMDM Disease mutations102724392
Blocks (Seattle)LINC02197
Protein Interaction databases
BioGRIDLINC02197
STRING (EMBL)LINC02197
ZODIACLINC02197
Ontologies - Pathways
Huge Navigator LINC02197 [HugePedia]
snp3D : Map Gene to Disease102724392
BioCentury BCIQLINC02197
ClinGenLINC02197
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724392
Clinical trialLINC02197
Miscellaneous
canSAR (ICR)LINC02197 (select the gene name)
DataMed IndexLINC02197
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02197
EVEXLINC02197
GoPubMedLINC02197
iHOPLINC02197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 7 17:25:39 CEST 2019

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