Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC02197 (long intergenic non-protein coding RNA 2197)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC02197
LocusID (NCBI) 102724392
Atlas_Id 78848
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69741752 and ends at 69742138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC02197   53063
Cards
Entrez_Gene (NCBI)LINC02197    long intergenic non-protein coding RNA 2197
Aliases
GeneCards (Weizmann)LINC02197
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:69741752-69742138 [Contig_View]  LINC02197 [Vega]
TCGA cBioPortalLINC02197
AceView (NCBI)LINC02197
Genatlas (Paris)LINC02197
SOURCE (Princeton)LINC02197
Genetics Home Reference (NIH)LINC02197
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02197  -     chr5:69741752-69742138 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02197  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC02197 - 5q13.2 [CytoView hg19]  LINC02197 - 5q13.2 [CytoView hg38]
Genome Data Viewer NCBILINC02197 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK123868 AK310013 CF141492 DA795384
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02197
Gene ExpressionLINC02197 [ NCBI-GEO ]   LINC02197 [ EBI - ARRAY_EXPRESS ]   LINC02197 [ SEEK ]   LINC02197 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02197 [ Firebrowse - Broad ]
GenevisibleExpression of LINC02197 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724392
GTEX Portal (Tissue expression)LINC02197
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02197
Protein Interaction databases
BioGRIDLINC02197
STRING (EMBL)LINC02197
ZODIACLINC02197
Ontologies - Pathways
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC02197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:02:48 CET 2022

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