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LINC02199 (long intergenic non-protein coding RNA 2199)

Identity

Other alias-
HGNC (Hugo) LINC02199
LocusID (NCBI) 101929284
Atlas_Id 79627
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 8839732 and ends at 8881524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02199   53065
Cards
Entrez_Gene (NCBI)LINC02199  101929284  long intergenic non-protein coding RNA 2199
Aliases
GeneCards (Weizmann)LINC02199
Ensembl hg19 (Hinxton)ENSG00000250198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250198 [Gene_View]  ENSG00000250198 [Sequence]  chr5:8839732-8881524 [Contig_View]  LINC02199 [Vega]
ICGC DataPortalENSG00000250198
TCGA cBioPortalLINC02199
AceView (NCBI)LINC02199
Genatlas (Paris)LINC02199
WikiGenes101929284
SOURCE (Princeton)LINC02199
Genetics Home Reference (NIH)LINC02199
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02199  -     chr5:8839732-8881524 +  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02199  -     5p15.31   [Description]    (hg19-Feb_2009)
EnsemblLINC02199 - 5p15.31 [CytoView hg19]  LINC02199 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBILINC02199 [Mapview hg19]  LINC02199 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032891 BC087538 DB471379
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02199
Cluster EST : UnigeneHs.403715 [ NCBI ]
CGAP (NCI)Hs.403715
Alternative Splicing GalleryENSG00000250198
Gene ExpressionLINC02199 [ NCBI-GEO ]   LINC02199 [ EBI - ARRAY_EXPRESS ]   LINC02199 [ SEEK ]   LINC02199 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02199 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929284
GTEX Portal (Tissue expression)LINC02199
Human Protein AtlasENSG00000250198-LINC02199 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02199
DMDM Disease mutations101929284
Blocks (Seattle)LINC02199
Human Protein Atlas [tissue]ENSG00000250198-LINC02199 [tissue]
Protein Interaction databases
FunCoupENSG00000250198
BioGRIDLINC02199
STRING (EMBL)LINC02199
ZODIACLINC02199
Ontologies - Pathways
Huge Navigator LINC02199 [HugePedia]
snp3D : Map Gene to Disease101929284
BioCentury BCIQLINC02199
ClinGenLINC02199
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929284
Clinical trialLINC02199
Miscellaneous
canSAR (ICR)LINC02199 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02199
EVEXLINC02199
GoPubMedLINC02199
iHOPLINC02199
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:10 CEST 2018

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