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LINC02200 (long intergenic non-protein coding RNA 2200)

Identity

Other alias-
HGNC (Hugo) LINC02200
LocusID (NCBI) 102467214
Atlas_Id 79289
Location 5q22.2  [Link to chromosome band 5q22]
Location_base_pair Starts at 112628436 and ends at 112630921 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02200   53066
Cards
Entrez_Gene (NCBI)LINC02200  102467214  long intergenic non-protein coding RNA 2200
Aliases
GeneCards (Weizmann)LINC02200
Ensembl hg19 (Hinxton)ENSG00000250358 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250358 [Gene_View]  ENSG00000250358 [Sequence]  chr5:112628436-112630921 [Contig_View]  LINC02200 [Vega]
ICGC DataPortalENSG00000250358
TCGA cBioPortalLINC02200
AceView (NCBI)LINC02200
Genatlas (Paris)LINC02200
WikiGenes102467214
SOURCE (Princeton)LINC02200
Genetics Home Reference (NIH)LINC02200
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02200  -     chr5:112628436-112630921 +  5q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02200  -     5q22.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02200 - 5q22.2 [CytoView hg19]  LINC02200 - 5q22.2 [CytoView hg38]
Mapping of homologs : NCBILINC02200 [Mapview hg19]  LINC02200 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA855037 BX106826 DR033753
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02200
Cluster EST : UnigeneHs.124613 [ NCBI ]
CGAP (NCI)Hs.124613
Alternative Splicing GalleryENSG00000250358
Gene ExpressionLINC02200 [ NCBI-GEO ]   LINC02200 [ EBI - ARRAY_EXPRESS ]   LINC02200 [ SEEK ]   LINC02200 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02200 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467214
GTEX Portal (Tissue expression)LINC02200
Human Protein AtlasENSG00000250358-LINC02200 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02200
DMDM Disease mutations102467214
Blocks (Seattle)LINC02200
Human Protein Atlas [tissue]ENSG00000250358-LINC02200 [tissue]
Protein Interaction databases
FunCoupENSG00000250358
BioGRIDLINC02200
STRING (EMBL)LINC02200
ZODIACLINC02200
Ontologies - Pathways
Huge Navigator LINC02200 [HugePedia]
snp3D : Map Gene to Disease102467214
BioCentury BCIQLINC02200
ClinGenLINC02200
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467214
Clinical trialLINC02200
Miscellaneous
canSAR (ICR)LINC02200 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02200
EVEXLINC02200
GoPubMedLINC02200
iHOPLINC02200
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:10 CEST 2018

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