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LINC02201 (long intergenic non-protein coding RNA 2201)

Identity

Other alias-
HGNC (Hugo) LINC02201
LocusID (NCBI) 101927379
Atlas_Id 78817
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 122628952 and ends at 122730560 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02201   53067
Cards
Entrez_Gene (NCBI)LINC02201  101927379  long intergenic non-protein coding RNA 2201
Aliases
GeneCards (Weizmann)LINC02201
Ensembl hg19 (Hinxton)ENSG00000251538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251538 [Gene_View]  ENSG00000251538 [Sequence]  chr5:122628952-122730560 [Contig_View]  LINC02201 [Vega]
ICGC DataPortalENSG00000251538
TCGA cBioPortalLINC02201
AceView (NCBI)LINC02201
Genatlas (Paris)LINC02201
WikiGenes101927379
SOURCE (Princeton)LINC02201
Genetics Home Reference (NIH)LINC02201
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02201  -     chr5:122628952-122730560 -  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02201  -     5q23.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02201 - 5q23.2 [CytoView hg19]  LINC02201 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBILINC02201 [Mapview hg19]  LINC02201 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043373 BX119826 BX956511
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02201
Cluster EST : UnigeneHs.566286 [ NCBI ]
CGAP (NCI)Hs.566286
Alternative Splicing GalleryENSG00000251538
Gene ExpressionLINC02201 [ NCBI-GEO ]   LINC02201 [ EBI - ARRAY_EXPRESS ]   LINC02201 [ SEEK ]   LINC02201 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02201 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927379
GTEX Portal (Tissue expression)LINC02201
Human Protein AtlasENSG00000251538-LINC02201 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02201
DMDM Disease mutations101927379
Blocks (Seattle)LINC02201
Human Protein Atlas [tissue]ENSG00000251538-LINC02201 [tissue]
Protein Interaction databases
FunCoupENSG00000251538
BioGRIDLINC02201
STRING (EMBL)LINC02201
ZODIACLINC02201
Ontologies - Pathways
Huge Navigator LINC02201 [HugePedia]
snp3D : Map Gene to Disease101927379
BioCentury BCIQLINC02201
ClinGenLINC02201
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927379
Clinical trialLINC02201
Miscellaneous
canSAR (ICR)LINC02201 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02201
EVEXLINC02201
GoPubMedLINC02201
iHOPLINC02201
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:11 CEST 2018

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