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LINC02202 (long intergenic non-protein coding RNA 2202)

Identity

Other alias-
HGNC (Hugo) LINC02202
LocusID (NCBI) 101927740
Atlas_Id 79954
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 159100483 and ends at 159117478 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02202   53068
Cards
Entrez_Gene (NCBI)LINC02202  101927740  long intergenic non-protein coding RNA 2202
Aliases
GeneCards (Weizmann)LINC02202
Ensembl hg19 (Hinxton)ENSG00000245812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245812 [Gene_View]  ENSG00000245812 [Sequence]  chr5:159100483-159117478 [Contig_View]  LINC02202 [Vega]
ICGC DataPortalENSG00000245812
TCGA cBioPortalLINC02202
AceView (NCBI)LINC02202
Genatlas (Paris)LINC02202
WikiGenes101927740
SOURCE (Princeton)LINC02202
Genetics Home Reference (NIH)LINC02202
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02202  -     chr5:159100483-159117478 +  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02202  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02202 - 5q33.3 [CytoView hg19]  LINC02202 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBILINC02202 [Mapview hg19]  LINC02202 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123543
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02202
Cluster EST : UnigeneHs.738721 [ NCBI ]
CGAP (NCI)Hs.738721
Alternative Splicing GalleryENSG00000245812
Gene ExpressionLINC02202 [ NCBI-GEO ]   LINC02202 [ EBI - ARRAY_EXPRESS ]   LINC02202 [ SEEK ]   LINC02202 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02202 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927740
GTEX Portal (Tissue expression)LINC02202
Human Protein AtlasENSG00000245812-LINC02202 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02202
DMDM Disease mutations101927740
Blocks (Seattle)LINC02202
Human Protein Atlas [tissue]ENSG00000245812-LINC02202 [tissue]
Protein Interaction databases
FunCoupENSG00000245812
BioGRIDLINC02202
STRING (EMBL)LINC02202
ZODIACLINC02202
Ontologies - Pathways
Huge Navigator LINC02202 [HugePedia]
snp3D : Map Gene to Disease101927740
BioCentury BCIQLINC02202
ClinGenLINC02202
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927740
Clinical trialLINC02202
Miscellaneous
canSAR (ICR)LINC02202 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02202
EVEXLINC02202
GoPubMedLINC02202
iHOPLINC02202
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:11 CEST 2018

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