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LINC02209 (long intergenic non-protein coding RNA 2209)

Identity

Alias_namesFAM183CP
family with sequence similarity 183, member C, pseudogene
family with sequence similarity 183 member C, pseudogene
Other alias
HGNC (Hugo) LINC02209
LocusID (NCBI) 286135
Atlas_Id 79780
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 29921513 and ends at 29953607 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02209   27827
Cards
Entrez_Gene (NCBI)LINC02209  286135  long intergenic non-protein coding RNA 2209
AliasesFAM183CP
GeneCards (Weizmann)LINC02209
Ensembl hg19 (Hinxton)ENSG00000253279 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253279 [Gene_View]  chr8:29921513-29953607 [Contig_View]  LINC02209 [Vega]
ICGC DataPortalENSG00000253279
TCGA cBioPortalLINC02209
AceView (NCBI)LINC02209
Genatlas (Paris)LINC02209
WikiGenes286135
SOURCE (Princeton)LINC02209
Genetics Home Reference (NIH)LINC02209
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02209  -     chr8:29921513-29953607 +  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02209  -     8p12   [Description]    (hg19-Feb_2009)
EnsemblLINC02209 - 8p12 [CytoView hg19]  LINC02209 - 8p12 [CytoView hg38]
Mapping of homologs : NCBILINC02209 [Mapview hg19]  LINC02209 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833525 BC028745 BC045833 BC126344
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02209
Cluster EST : UnigeneHs.376840 [ NCBI ]
CGAP (NCI)Hs.376840
Alternative Splicing GalleryENSG00000253279
Gene ExpressionLINC02209 [ NCBI-GEO ]   LINC02209 [ EBI - ARRAY_EXPRESS ]   LINC02209 [ SEEK ]   LINC02209 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02209 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)286135
GTEX Portal (Tissue expression)LINC02209
Human Protein AtlasENSG00000253279-LINC02209 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02209
DMDM Disease mutations286135
Blocks (Seattle)LINC02209
Human Protein Atlas [tissue]ENSG00000253279-LINC02209 [tissue]
IPIIPI00884039   
Protein Interaction databases
FunCoupENSG00000253279
BioGRIDLINC02209
STRING (EMBL)LINC02209
ZODIACLINC02209
Ontologies - Pathways
Huge Navigator LINC02209 [HugePedia]
snp3D : Map Gene to Disease286135
BioCentury BCIQLINC02209
ClinGenLINC02209
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286135
Clinical trialLINC02209
Miscellaneous
canSAR (ICR)LINC02209 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02209
EVEXLINC02209
GoPubMedLINC02209
iHOPLINC02209
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:27 CET 2017

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