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LINC02213 (long intergenic non-protein coding RNA 2213)

Identity

Other alias-
HGNC (Hugo) LINC02213
LocusID (NCBI) 389273
Atlas_Id 79237
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10504990 and ends at 10522084 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02213   53080
Cards
Entrez_Gene (NCBI)LINC02213  389273  long intergenic non-protein coding RNA 2213
Aliases
GeneCards (Weizmann)LINC02213
Ensembl hg19 (Hinxton)ENSG00000249160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249160 [Gene_View]  ENSG00000249160 [Sequence]  chr5:10504990-10522084 [Contig_View]  LINC02213 [Vega]
ICGC DataPortalENSG00000249160
TCGA cBioPortalLINC02213
AceView (NCBI)LINC02213
Genatlas (Paris)LINC02213
WikiGenes389273
SOURCE (Princeton)LINC02213
Genetics Home Reference (NIH)LINC02213
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02213  -     chr5:10504990-10522084 -  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02213  -     5p15.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02213 - 5p15.2 [CytoView hg19]  LINC02213 - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBILINC02213 [Mapview hg19]  LINC02213 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130861 CR740839
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02213
Cluster EST : UnigeneHs.519206 [ NCBI ]
CGAP (NCI)Hs.519206
Alternative Splicing GalleryENSG00000249160
Gene ExpressionLINC02213 [ NCBI-GEO ]   LINC02213 [ EBI - ARRAY_EXPRESS ]   LINC02213 [ SEEK ]   LINC02213 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02213 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)389273
GTEX Portal (Tissue expression)LINC02213
Human Protein AtlasENSG00000249160-LINC02213 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02213
DMDM Disease mutations389273
Blocks (Seattle)LINC02213
Human Protein Atlas [tissue]ENSG00000249160-LINC02213 [tissue]
IPIIPI00966085   
Protein Interaction databases
FunCoupENSG00000249160
BioGRIDLINC02213
STRING (EMBL)LINC02213
ZODIACLINC02213
Ontologies - Pathways
Huge Navigator LINC02213 [HugePedia]
snp3D : Map Gene to Disease389273
BioCentury BCIQLINC02213
ClinGenLINC02213
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389273
Clinical trialLINC02213
Miscellaneous
canSAR (ICR)LINC02213 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02213
EVEXLINC02213
GoPubMedLINC02213
iHOPLINC02213
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:13 CEST 2018

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