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LINC02217 (long intergenic non-protein coding RNA 2217)

Identity

Other alias-
HGNC (Hugo) LINC02217
LocusID (NCBI) 101929544
Atlas_Id 79110
Location 5p15.1  [Link to chromosome band 5p15]
Location_base_pair Starts at 17436737 and ends at 17441694 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02217   53084
Cards
Entrez_Gene (NCBI)LINC02217  101929544  long intergenic non-protein coding RNA 2217
Aliases
GeneCards (Weizmann)LINC02217
Ensembl hg19 (Hinxton)ENSG00000248455 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248455 [Gene_View]  ENSG00000248455 [Sequence]  chr5:17436737-17441694 [Contig_View]  LINC02217 [Vega]
ICGC DataPortalENSG00000248455
TCGA cBioPortalLINC02217
AceView (NCBI)LINC02217
Genatlas (Paris)LINC02217
WikiGenes101929544
SOURCE (Princeton)LINC02217
Genetics Home Reference (NIH)LINC02217
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02217  -     chr5:17436737-17441694 +  5p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02217  -     5p15.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02217 - 5p15.1 [CytoView hg19]  LINC02217 - 5p15.1 [CytoView hg38]
Mapping of homologs : NCBILINC02217 [Mapview hg19]  LINC02217 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE222606 BX099719 CK299668
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02217
Cluster EST : UnigeneHs.23725 [ NCBI ]
CGAP (NCI)Hs.23725
Alternative Splicing GalleryENSG00000248455
Gene ExpressionLINC02217 [ NCBI-GEO ]   LINC02217 [ EBI - ARRAY_EXPRESS ]   LINC02217 [ SEEK ]   LINC02217 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02217 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929544
GTEX Portal (Tissue expression)LINC02217
Human Protein AtlasENSG00000248455-LINC02217 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02217
DMDM Disease mutations101929544
Blocks (Seattle)LINC02217
Human Protein Atlas [tissue]ENSG00000248455-LINC02217 [tissue]
Protein Interaction databases
FunCoupENSG00000248455
BioGRIDLINC02217
STRING (EMBL)LINC02217
ZODIACLINC02217
Ontologies - Pathways
Huge Navigator LINC02217 [HugePedia]
snp3D : Map Gene to Disease101929544
BioCentury BCIQLINC02217
ClinGenLINC02217
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929544
Clinical trialLINC02217
Miscellaneous
canSAR (ICR)LINC02217 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02217
EVEXLINC02217
GoPubMedLINC02217
iHOPLINC02217
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:14 CEST 2018

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