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LINC02220 (long intergenic non-protein coding RNA 2220)

Identity

Other alias-
HGNC (Hugo) LINC02220
LocusID (NCBI) 105374658
Atlas_Id 79754
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 12877472 and ends at 13032886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02220   53087
Cards
Entrez_Gene (NCBI)LINC02220  105374658  long intergenic non-protein coding RNA 2220
Aliases
GeneCards (Weizmann)LINC02220
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:12877472-13032886 [Contig_View]  LINC02220 [Vega]
TCGA cBioPortalLINC02220
AceView (NCBI)LINC02220
Genatlas (Paris)LINC02220
WikiGenes105374658
SOURCE (Princeton)LINC02220
Genetics Home Reference (NIH)LINC02220
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02220  -     chr5:12877472-13032886 -  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02220  -     5p15.2   [Description]    (hg19-Feb_2009)
LINC02220 - 5p15.2 [CytoView hg19]  LINC02220 - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBILINC02220 [Mapview hg19]  LINC02220 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02220
Gene ExpressionLINC02220 [ NCBI-GEO ]   LINC02220 [ EBI - ARRAY_EXPRESS ]   LINC02220 [ SEEK ]   LINC02220 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02220 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374658
GTEX Portal (Tissue expression)LINC02220
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02220
DMDM Disease mutations105374658
Blocks (Seattle)LINC02220
Protein Interaction databases
BioGRIDLINC02220
STRING (EMBL)LINC02220
ZODIACLINC02220
Ontologies - Pathways
Huge Navigator LINC02220 [HugePedia]
snp3D : Map Gene to Disease105374658
BioCentury BCIQLINC02220
ClinGenLINC02220
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374658
Clinical trialLINC02220
Miscellaneous
canSAR (ICR)LINC02220 (select the gene name)
DataMed IndexLINC02220
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02220
EVEXLINC02220
GoPubMedLINC02220
iHOPLINC02220
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:36:01 CEST 2019

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