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LINC02221 (long intergenic non-protein coding RNA 2221)

Identity

Other alias-
HGNC (Hugo) LINC02221
LocusID (NCBI) 105374648
Atlas_Id 80252
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 9854377 and ends at 9857609 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02221   53090
Cards
Entrez_Gene (NCBI)LINC02221  105374648  long intergenic non-protein coding RNA 2221
Aliases
GeneCards (Weizmann)LINC02221
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:9854377-9857609 [Contig_View]  LINC02221 [Vega]
TCGA cBioPortalLINC02221
AceView (NCBI)LINC02221
Genatlas (Paris)LINC02221
WikiGenes105374648
SOURCE (Princeton)LINC02221
Genetics Home Reference (NIH)LINC02221
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02221  -     chr5:9854377-9857609 +  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02221  -     5p15.31   [Description]    (hg19-Feb_2009)
LINC02221 - 5p15.31 [CytoView hg19]  LINC02221 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBILINC02221 [Mapview hg19]  LINC02221 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX096515 DB456037
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02221
Cluster EST : UnigeneHs.642381 [ NCBI ]
CGAP (NCI)Hs.642381
Gene ExpressionLINC02221 [ NCBI-GEO ]   LINC02221 [ EBI - ARRAY_EXPRESS ]   LINC02221 [ SEEK ]   LINC02221 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02221 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374648
GTEX Portal (Tissue expression)LINC02221
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02221
DMDM Disease mutations105374648
Blocks (Seattle)LINC02221
Protein Interaction databases
BioGRIDLINC02221
STRING (EMBL)LINC02221
ZODIACLINC02221
Ontologies - Pathways
Huge Navigator LINC02221 [HugePedia]
snp3D : Map Gene to Disease105374648
BioCentury BCIQLINC02221
ClinGenLINC02221
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374648
Clinical trialLINC02221
Miscellaneous
canSAR (ICR)LINC02221 (select the gene name)
DataMed IndexLINC02221
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02221
EVEXLINC02221
GoPubMedLINC02221
iHOPLINC02221
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:36:01 CEST 2019

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