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LINC02222 (long intergenic non-protein coding RNA 2222)

Identity

Other alias-
HGNC (Hugo) LINC02222
LocusID (NCBI) 105377765
Atlas_Id 79105
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 180684096 and ends at 180686543 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02222   53091
Cards
Entrez_Gene (NCBI)LINC02222  105377765  long intergenic non-protein coding RNA 2222
Aliases
GeneCards (Weizmann)LINC02222
Ensembl hg19 (Hinxton)ENSG00000248717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248717 [Gene_View]  ENSG00000248717 [Sequence]  chr5:180684096-180686543 [Contig_View]  LINC02222 [Vega]
ICGC DataPortalENSG00000248717
TCGA cBioPortalLINC02222
AceView (NCBI)LINC02222
Genatlas (Paris)LINC02222
WikiGenes105377765
SOURCE (Princeton)LINC02222
Genetics Home Reference (NIH)LINC02222
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02222  -     chr5:180684096-180686543 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02222  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblLINC02222 - 5q35.3 [CytoView hg19]  LINC02222 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBILINC02222 [Mapview hg19]  LINC02222 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI024544 DB087839
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02222
Cluster EST : UnigeneHs.131536 [ NCBI ]
CGAP (NCI)Hs.131536
Alternative Splicing GalleryENSG00000248717
Gene ExpressionLINC02222 [ NCBI-GEO ]   LINC02222 [ EBI - ARRAY_EXPRESS ]   LINC02222 [ SEEK ]   LINC02222 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02222 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377765
GTEX Portal (Tissue expression)LINC02222
Human Protein AtlasENSG00000248717-LINC02222 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02222
DMDM Disease mutations105377765
Blocks (Seattle)LINC02222
Human Protein Atlas [tissue]ENSG00000248717-LINC02222 [tissue]
Protein Interaction databases
FunCoupENSG00000248717
BioGRIDLINC02222
STRING (EMBL)LINC02222
ZODIACLINC02222
Ontologies - Pathways
Huge Navigator LINC02222 [HugePedia]
snp3D : Map Gene to Disease105377765
BioCentury BCIQLINC02222
ClinGenLINC02222
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377765
Clinical trialLINC02222
Miscellaneous
canSAR (ICR)LINC02222 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02222
EVEXLINC02222
GoPubMedLINC02222
iHOPLINC02222
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:15 CEST 2018

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