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LINC02224 (long intergenic non-protein coding RNA 2224)

Identity

Alias_symbol (synonym)BRCAT107
ENST00000505706
Other alias
HGNC (Hugo) LINC02224
LocusID (NCBI) 102723839
Atlas_Id 79528
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 44495145 and ends at 44510282 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02224   53093
Cards
Entrez_Gene (NCBI)LINC02224  102723839  long intergenic non-protein coding RNA 2224
AliasesBRCAT107
GeneCards (Weizmann)LINC02224
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:44495145-44510282 [Contig_View]  LINC02224 [Vega]
TCGA cBioPortalLINC02224
AceView (NCBI)LINC02224
Genatlas (Paris)LINC02224
WikiGenes102723839
SOURCE (Princeton)LINC02224
Genetics Home Reference (NIH)LINC02224
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02224  -     chr5:44495145-44510282 -  5p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02224  -     5p12   [Description]    (hg19-Feb_2009)
LINC02224 - 5p12 [CytoView hg19]  LINC02224 - 5p12 [CytoView hg38]
Mapping of homologs : NCBILINC02224 [Mapview hg19]  LINC02224 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG184326 BG200391 DB000670 DB005812
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02224
Cluster EST : UnigeneHs.561412 [ NCBI ]
CGAP (NCI)Hs.561412
Gene ExpressionLINC02224 [ NCBI-GEO ]   LINC02224 [ EBI - ARRAY_EXPRESS ]   LINC02224 [ SEEK ]   LINC02224 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02224 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723839
GTEX Portal (Tissue expression)LINC02224
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02224
DMDM Disease mutations102723839
Blocks (Seattle)LINC02224
Protein Interaction databases
BioGRIDLINC02224
STRING (EMBL)LINC02224
ZODIACLINC02224
Ontologies - Pathways
Huge Navigator LINC02224 [HugePedia]
snp3D : Map Gene to Disease102723839
BioCentury BCIQLINC02224
ClinGenLINC02224
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723839
Clinical trialLINC02224
Miscellaneous
canSAR (ICR)LINC02224 (select the gene name)
DataMed IndexLINC02224
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02224
EVEXLINC02224
GoPubMedLINC02224
iHOPLINC02224
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:36:02 CEST 2019

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