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LINC02225 (long intergenic non-protein coding RNA 2225)

Identity

Other alias-
HGNC (Hugo) LINC02225
LocusID (NCBI) 101928539
Atlas_Id 79940
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 57890331 and ends at 57899162 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02225   53094
Cards
Entrez_Gene (NCBI)LINC02225  101928539  long intergenic non-protein coding RNA 2225
Aliases
GeneCards (Weizmann)LINC02225
Ensembl hg19 (Hinxton)ENSG00000249584 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249584 [Gene_View]  ENSG00000249584 [Sequence]  chr5:57890331-57899162 [Contig_View]  LINC02225 [Vega]
ICGC DataPortalENSG00000249584
TCGA cBioPortalLINC02225
AceView (NCBI)LINC02225
Genatlas (Paris)LINC02225
WikiGenes101928539
SOURCE (Princeton)LINC02225
Genetics Home Reference (NIH)LINC02225
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02225  -     chr5:57890331-57899162 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02225  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02225 - 5q11.2 [CytoView hg19]  LINC02225 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBILINC02225 [Mapview hg19]  LINC02225 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041836
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02225
Cluster EST : UnigeneHs.639385 [ NCBI ]
CGAP (NCI)Hs.639385
Alternative Splicing GalleryENSG00000249584
Gene ExpressionLINC02225 [ NCBI-GEO ]   LINC02225 [ EBI - ARRAY_EXPRESS ]   LINC02225 [ SEEK ]   LINC02225 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02225 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928539
GTEX Portal (Tissue expression)LINC02225
Human Protein AtlasENSG00000249584-LINC02225 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02225
DMDM Disease mutations101928539
Blocks (Seattle)LINC02225
Human Protein Atlas [tissue]ENSG00000249584-LINC02225 [tissue]
Protein Interaction databases
FunCoupENSG00000249584
BioGRIDLINC02225
STRING (EMBL)LINC02225
ZODIACLINC02225
Ontologies - Pathways
Huge Navigator LINC02225 [HugePedia]
snp3D : Map Gene to Disease101928539
BioCentury BCIQLINC02225
ClinGenLINC02225
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928539
Clinical trialLINC02225
Miscellaneous
canSAR (ICR)LINC02225 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02225
EVEXLINC02225
GoPubMedLINC02225
iHOPLINC02225
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:16 CEST 2018

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