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LINC02226 (long intergenic non-protein coding RNA 2226)

Identity

Other alias-
HGNC (Hugo) LINC02226
LocusID (NCBI) 729506
Atlas_Id 78915
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 8333483 and ends at 8457564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02226   53095
Cards
Entrez_Gene (NCBI)LINC02226  729506  long intergenic non-protein coding RNA 2226
Aliases
GeneCards (Weizmann)LINC02226
Ensembl hg19 (Hinxton)ENSG00000245729 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245729 [Gene_View]  ENSG00000245729 [Sequence]  chr5:8333483-8457564 [Contig_View]  LINC02226 [Vega]
ICGC DataPortalENSG00000245729
TCGA cBioPortalLINC02226
AceView (NCBI)LINC02226
Genatlas (Paris)LINC02226
WikiGenes729506
SOURCE (Princeton)LINC02226
Genetics Home Reference (NIH)LINC02226
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02226  -     chr5:8333483-8457564 -  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02226  -     5p15.31   [Description]    (hg19-Feb_2009)
EnsemblLINC02226 - 5p15.31 [CytoView hg19]  LINC02226 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBILINC02226 [Mapview hg19]  LINC02226 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043282 DB447020
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02226
Cluster EST : UnigeneHs.566412 [ NCBI ]
CGAP (NCI)Hs.566412
Alternative Splicing GalleryENSG00000245729
Gene ExpressionLINC02226 [ NCBI-GEO ]   LINC02226 [ EBI - ARRAY_EXPRESS ]   LINC02226 [ SEEK ]   LINC02226 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02226 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)729506
GTEX Portal (Tissue expression)LINC02226
Human Protein AtlasENSG00000245729-LINC02226 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02226
DMDM Disease mutations729506
Blocks (Seattle)LINC02226
Human Protein Atlas [tissue]ENSG00000245729-LINC02226 [tissue]
Protein Interaction databases
FunCoupENSG00000245729
BioGRIDLINC02226
STRING (EMBL)LINC02226
ZODIACLINC02226
Ontologies - Pathways
Huge Navigator LINC02226 [HugePedia]
snp3D : Map Gene to Disease729506
BioCentury BCIQLINC02226
ClinGenLINC02226
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729506
Clinical trialLINC02226
Miscellaneous
canSAR (ICR)LINC02226 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02226
EVEXLINC02226
GoPubMedLINC02226
iHOPLINC02226
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:16 CEST 2018

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