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LINC02227 (long intergenic non-protein coding RNA 2227)

Identity

Other alias-
HGNC (Hugo) LINC02227
LocusID (NCBI) 101927697
Atlas_Id 79630
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 158320701 and ends at 158409773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02227   53096
Cards
Entrez_Gene (NCBI)LINC02227  101927697  long intergenic non-protein coding RNA 2227
Aliases
GeneCards (Weizmann)LINC02227
Ensembl hg19 (Hinxton)ENSG00000276778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276778 [Gene_View]  ENSG00000276778 [Sequence]  chr5:158320701-158409773 [Contig_View]  LINC02227 [Vega]
ICGC DataPortalENSG00000276778
TCGA cBioPortalLINC02227
AceView (NCBI)LINC02227
Genatlas (Paris)LINC02227
WikiGenes101927697
SOURCE (Princeton)LINC02227
Genetics Home Reference (NIH)LINC02227
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02227  -     chr5:158320701-158409773 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02227  -     5q33.3   [Description]    (hg19-Feb_2009)
LINC02227 - 5q33.3 [CytoView hg19]  LINC02227 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBILINC02227 [Mapview hg19]  LINC02227 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC047601
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02227
Cluster EST : UnigeneHs.483960 [ NCBI ]
CGAP (NCI)Hs.483960
Alternative Splicing GalleryENSG00000276778
Gene ExpressionLINC02227 [ NCBI-GEO ]   LINC02227 [ EBI - ARRAY_EXPRESS ]   LINC02227 [ SEEK ]   LINC02227 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02227 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927697
GTEX Portal (Tissue expression)LINC02227
Human Protein AtlasENSG00000276778-LINC02227 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02227
DMDM Disease mutations101927697
Blocks (Seattle)LINC02227
Human Protein Atlas [tissue]ENSG00000276778-LINC02227 [tissue]
Protein Interaction databases
FunCoupENSG00000276778
BioGRIDLINC02227
STRING (EMBL)LINC02227
ZODIACLINC02227
Ontologies - Pathways
Huge Navigator LINC02227 [HugePedia]
snp3D : Map Gene to Disease101927697
BioCentury BCIQLINC02227
ClinGenLINC02227
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927697
Clinical trialLINC02227
Miscellaneous
canSAR (ICR)LINC02227 (select the gene name)
DataMed IndexLINC02227
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02227
EVEXLINC02227
GoPubMedLINC02227
iHOPLINC02227
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Apr 30 13:36:02 CEST 2019

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