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LINC02228 (long intergenic non-protein coding RNA 2228)

Identity

Other alias-
HGNC (Hugo) LINC02228
LocusID (NCBI) 105374694
Atlas_Id 80162
Location 5p14.1  [Link to chromosome band 5p14]
Location_base_pair Starts at 25126305 and ends at 25190656 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02228   53097
Cards
Entrez_Gene (NCBI)LINC02228  105374694  long intergenic non-protein coding RNA 2228
Aliases
GeneCards (Weizmann)LINC02228
Ensembl hg19 (Hinxton)ENSG00000251273 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251273 [Gene_View]  ENSG00000251273 [Sequence]  chr5:25126305-25190656 [Contig_View]  LINC02228 [Vega]
ICGC DataPortalENSG00000251273
TCGA cBioPortalLINC02228
AceView (NCBI)LINC02228
Genatlas (Paris)LINC02228
WikiGenes105374694
SOURCE (Princeton)LINC02228
Genetics Home Reference (NIH)LINC02228
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02228  -     chr5:25126305-25190656 -  5p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02228  -     5p14.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02228 - 5p14.1 [CytoView hg19]  LINC02228 - 5p14.1 [CytoView hg38]
Mapping of homologs : NCBILINC02228 [Mapview hg19]  LINC02228 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CB995880
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02228
Alternative Splicing GalleryENSG00000251273
Gene ExpressionLINC02228 [ NCBI-GEO ]   LINC02228 [ EBI - ARRAY_EXPRESS ]   LINC02228 [ SEEK ]   LINC02228 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02228 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374694
GTEX Portal (Tissue expression)LINC02228
Human Protein AtlasENSG00000251273-LINC02228 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02228
DMDM Disease mutations105374694
Blocks (Seattle)LINC02228
Human Protein Atlas [tissue]ENSG00000251273-LINC02228 [tissue]
Protein Interaction databases
FunCoupENSG00000251273
BioGRIDLINC02228
STRING (EMBL)LINC02228
ZODIACLINC02228
Ontologies - Pathways
Huge Navigator LINC02228 [HugePedia]
snp3D : Map Gene to Disease105374694
BioCentury BCIQLINC02228
ClinGenLINC02228
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374694
Clinical trialLINC02228
Miscellaneous
canSAR (ICR)LINC02228 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02228
EVEXLINC02228
GoPubMedLINC02228
iHOPLINC02228
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:17 CEST 2018

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