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LINC02233 (long intergenic non-protein coding RNA 2233)

Identity

Alias_symbol (synonym)RP11-6C14.1
Other alias-
HGNC (Hugo) LINC02233
LocusID (NCBI) 109729132
Atlas_Id 79987
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 159666506 and ends at 159777784 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02233   53104
Cards
Entrez_Gene (NCBI)LINC02233  109729132  long intergenic non-protein coding RNA 2233
Aliases
GeneCards (Weizmann)LINC02233
Ensembl hg19 (Hinxton)ENSG00000250488 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250488 [Gene_View]  ENSG00000250488 [Sequence]  chr4:159666506-159777784 [Contig_View]  LINC02233 [Vega]
ICGC DataPortalENSG00000250488
TCGA cBioPortalLINC02233
AceView (NCBI)LINC02233
Genatlas (Paris)LINC02233
WikiGenes109729132
SOURCE (Princeton)LINC02233
Genetics Home Reference (NIH)LINC02233
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02233  -     chr4:159666506-159777784 -  4q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02233  -     4q32.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02233 - 4q32.1 [CytoView hg19]  LINC02233 - 4q32.1 [CytoView hg38]
Mapping of homologs : NCBILINC02233 [Mapview hg19]  LINC02233 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA480441
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02233
Alternative Splicing GalleryENSG00000250488
Gene ExpressionLINC02233 [ NCBI-GEO ]   LINC02233 [ EBI - ARRAY_EXPRESS ]   LINC02233 [ SEEK ]   LINC02233 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02233 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109729132
GTEX Portal (Tissue expression)LINC02233
Human Protein AtlasENSG00000250488-LINC02233 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02233
DMDM Disease mutations109729132
Blocks (Seattle)LINC02233
Human Protein Atlas [tissue]ENSG00000250488-LINC02233 [tissue]
Protein Interaction databases
FunCoupENSG00000250488
BioGRIDLINC02233
STRING (EMBL)LINC02233
ZODIACLINC02233
Ontologies - Pathways
Huge Navigator LINC02233 [HugePedia]
snp3D : Map Gene to Disease109729132
BioCentury BCIQLINC02233
ClinGenLINC02233
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109729132
Clinical trialLINC02233
Miscellaneous
canSAR (ICR)LINC02233 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02233
EVEXLINC02233
GoPubMedLINC02233
iHOPLINC02233
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:17 CEST 2018

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