Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02238 (long intergenic non-protein coding RNA 2238)

Identity

Alias_symbol (synonym)RP4-788P17.1
Other alias-
HGNC (Hugo) LINC02238
LocusID (NCBI) 109729166
Atlas_Id 79056
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 73674679 and ends at 73738642 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02238   53116
Cards
Entrez_Gene (NCBI)LINC02238  109729166  long intergenic non-protein coding RNA 2238
Aliases
GeneCards (Weizmann)LINC02238
Ensembl hg19 (Hinxton)ENSG00000223479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223479 [Gene_View]  chr1:73674679-73738642 [Contig_View]  LINC02238 [Vega]
ICGC DataPortalENSG00000223479
TCGA cBioPortalLINC02238
AceView (NCBI)LINC02238
Genatlas (Paris)LINC02238
WikiGenes109729166
SOURCE (Princeton)LINC02238
Genetics Home Reference (NIH)LINC02238
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02238  -     chr1:73674679-73738642 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02238  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02238 - 1p31.1 [CytoView hg19]  LINC02238 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBILINC02238 [Mapview hg19]  LINC02238 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF444988
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02238
Cluster EST : UnigeneHs.563902 [ NCBI ]
CGAP (NCI)Hs.563902
Alternative Splicing GalleryENSG00000223479
Gene ExpressionLINC02238 [ NCBI-GEO ]   LINC02238 [ EBI - ARRAY_EXPRESS ]   LINC02238 [ SEEK ]   LINC02238 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02238 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109729166
GTEX Portal (Tissue expression)LINC02238
Human Protein AtlasENSG00000223479-LINC02238 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02238
DMDM Disease mutations109729166
Blocks (Seattle)LINC02238
Human Protein Atlas [tissue]ENSG00000223479-LINC02238 [tissue]
Protein Interaction databases
FunCoupENSG00000223479
BioGRIDLINC02238
STRING (EMBL)LINC02238
ZODIACLINC02238
Ontologies - Pathways
Huge Navigator LINC02238 [HugePedia]
snp3D : Map Gene to Disease109729166
BioCentury BCIQLINC02238
ClinGenLINC02238
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109729166
Clinical trialLINC02238
Miscellaneous
canSAR (ICR)LINC02238 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02238
EVEXLINC02238
GoPubMedLINC02238
iHOPLINC02238
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:16 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.