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LINC02240 (long intergenic non-protein coding RNA 2240)

Identity

Other alias-
HGNC (Hugo) LINC02240
LocusID (NCBI) 101927460
Atlas_Id 79026
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 125493261 and ends at 125602227 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02240   53118
Cards
Entrez_Gene (NCBI)LINC02240  101927460  long intergenic non-protein coding RNA 2240
Aliases
GeneCards (Weizmann)LINC02240
Ensembl hg19 (Hinxton)ENSG00000260192 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260192 [Gene_View]  ENSG00000260192 [Sequence]  chr5:125493261-125602227 [Contig_View]  LINC02240 [Vega]
ICGC DataPortalENSG00000260192
TCGA cBioPortalLINC02240
AceView (NCBI)LINC02240
Genatlas (Paris)LINC02240
WikiGenes101927460
SOURCE (Princeton)LINC02240
Genetics Home Reference (NIH)LINC02240
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02240  -     chr5:125493261-125602227 +  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02240  -     5q23.2   [Description]    (hg19-Feb_2009)
LINC02240 - 5q23.2 [CytoView hg19]  LINC02240 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBILINC02240 [Mapview hg19]  LINC02240 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039471
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02240
Cluster EST : UnigeneHs.407582 [ NCBI ]
CGAP (NCI)Hs.407582
Alternative Splicing GalleryENSG00000260192
Gene ExpressionLINC02240 [ NCBI-GEO ]   LINC02240 [ EBI - ARRAY_EXPRESS ]   LINC02240 [ SEEK ]   LINC02240 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02240 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927460
GTEX Portal (Tissue expression)LINC02240
Human Protein AtlasENSG00000260192-LINC02240 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02240
DMDM Disease mutations101927460
Blocks (Seattle)LINC02240
Human Protein Atlas [tissue]ENSG00000260192-LINC02240 [tissue]
Protein Interaction databases
FunCoupENSG00000260192
BioGRIDLINC02240
STRING (EMBL)LINC02240
ZODIACLINC02240
Ontologies - Pathways
Huge Navigator LINC02240 [HugePedia]
snp3D : Map Gene to Disease101927460
BioCentury BCIQLINC02240
ClinGenLINC02240
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927460
Clinical trialLINC02240
Miscellaneous
canSAR (ICR)LINC02240 (select the gene name)
DataMed IndexLINC02240
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02240
EVEXLINC02240
GoPubMedLINC02240
iHOPLINC02240
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Apr 30 13:36:04 CEST 2019

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