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LINC02242 (long intergenic non-protein coding RNA 2242)

Identity

Other alias-
HGNC (Hugo) LINC02242
LocusID (NCBI) 105379006
Atlas_Id 79839
Location 5q13.1  [Link to chromosome band 5q13]
Location_base_pair Starts at 67632266 and ends at 67646789 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02242   53127
Cards
Entrez_Gene (NCBI)LINC02242  105379006  long intergenic non-protein coding RNA 2242
Aliases
GeneCards (Weizmann)LINC02242
Ensembl hg19 (Hinxton)ENSG00000249736 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249736 [Gene_View]  ENSG00000249736 [Sequence]  chr5:67632266-67646789 [Contig_View]  LINC02242 [Vega]
ICGC DataPortalENSG00000249736
TCGA cBioPortalLINC02242
AceView (NCBI)LINC02242
Genatlas (Paris)LINC02242
WikiGenes105379006
SOURCE (Princeton)LINC02242
Genetics Home Reference (NIH)LINC02242
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02242  -     chr5:67632266-67646789 -  5q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02242  -     5q13.1   [Description]    (hg19-Feb_2009)
LINC02242 - 5q13.1 [CytoView hg19]  LINC02242 - 5q13.1 [CytoView hg38]
Mapping of homologs : NCBILINC02242 [Mapview hg19]  LINC02242 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CK430772
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02242
Alternative Splicing GalleryENSG00000249736
Gene ExpressionLINC02242 [ NCBI-GEO ]   LINC02242 [ EBI - ARRAY_EXPRESS ]   LINC02242 [ SEEK ]   LINC02242 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02242 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105379006
GTEX Portal (Tissue expression)LINC02242
Human Protein AtlasENSG00000249736-LINC02242 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02242
DMDM Disease mutations105379006
Blocks (Seattle)LINC02242
Human Protein Atlas [tissue]ENSG00000249736-LINC02242 [tissue]
Protein Interaction databases
FunCoupENSG00000249736
BioGRIDLINC02242
STRING (EMBL)LINC02242
ZODIACLINC02242
Ontologies - Pathways
Huge Navigator LINC02242 [HugePedia]
snp3D : Map Gene to Disease105379006
BioCentury BCIQLINC02242
ClinGenLINC02242
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105379006
Clinical trialLINC02242
Miscellaneous
canSAR (ICR)LINC02242 (select the gene name)
DataMed IndexLINC02242
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02242
EVEXLINC02242
GoPubMedLINC02242
iHOPLINC02242
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:36:04 CEST 2019

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