Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC02249 (long intergenic non-protein coding RNA 2249)

Identity

Alias_symbol (synonym)DKFZp434L187
Other aliasDKFZP434L187
HGNC (Hugo) LINC02249
LocusID (NCBI) 26082
Atlas_Id 79520
Location 15q13.2  [Link to chromosome band 15q13]
Location_base_pair Starts at 30196036 and ends at 30214540 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02249   32351
Cards
Entrez_Gene (NCBI)LINC02249  26082  long intergenic non-protein coding RNA 2249
AliasesDKFZP434L187
GeneCards (Weizmann)LINC02249
Ensembl hg19 (Hinxton)ENSG00000225930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225930 [Gene_View]  chr15:30196036-30214540 [Contig_View]  LINC02249 [Vega]
ICGC DataPortalENSG00000225930
TCGA cBioPortalLINC02249
AceView (NCBI)LINC02249
Genatlas (Paris)LINC02249
WikiGenes26082
SOURCE (Princeton)LINC02249
Genetics Home Reference (NIH)LINC02249
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02249  -     chr15:30196036-30214540 +  15q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02249  -     15q13.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02249 - 15q13.2 [CytoView hg19]  LINC02249 - 15q13.2 [CytoView hg38]
Mapping of homologs : NCBILINC02249 [Mapview hg19]  LINC02249 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL117445 BC033224 BC130408 BC130410
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187660 NW_011332701
Consensus coding sequences : CCDS (NCBI)LINC02249
Cluster EST : UnigeneHs.652128 [ NCBI ]
CGAP (NCI)Hs.652128
Alternative Splicing GalleryENSG00000225930
Gene ExpressionLINC02249 [ NCBI-GEO ]   LINC02249 [ EBI - ARRAY_EXPRESS ]   LINC02249 [ SEEK ]   LINC02249 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02249 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26082
GTEX Portal (Tissue expression)LINC02249
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFV3
Splice isoforms : SwissVarQ9UFV3
PhosPhoSitePlusQ9UFV3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02249
DMDM Disease mutations26082
Blocks (Seattle)LINC02249
SuperfamilyQ9UFV3
Human Protein AtlasENSG00000225930
Peptide AtlasQ9UFV3
IPIIPI00401852   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFV3
IntAct (EBI)Q9UFV3
FunCoupENSG00000225930
BioGRIDLINC02249
STRING (EMBL)LINC02249
ZODIACLINC02249
Ontologies - Pathways
QuickGOQ9UFV3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC02249
Atlas of Cancer Signalling NetworkLINC02249
Wikipedia pathwaysLINC02249
Orthology - Evolution
OrthoDB26082
GeneTree (enSembl)ENSG00000225930
Phylogenetic Trees/Animal Genes : TreeFamLINC02249
HOVERGENQ9UFV3
HOGENOMQ9UFV3
Homologs : HomoloGeneLINC02249
Homology/Alignments : Family Browser (UCSC)LINC02249
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC02249 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC02249
dbVarLINC02249
ClinVarLINC02249
1000_GenomesLINC02249 
Exome Variant ServerLINC02249
ExAC (Exome Aggregation Consortium)LINC02249 (select the gene name)
Genetic variants : HAPMAP26082
Genomic Variants (DGV)LINC02249 [DGVbeta]
DECIPHERLINC02249 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC02249 
Mutations
ICGC Data PortalLINC02249 
TCGA Data PortalLINC02249 
Broad Tumor PortalLINC02249
OASIS PortalLINC02249 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC02249
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC02249
DgiDB (Drug Gene Interaction Database)LINC02249
DoCM (Curated mutations)LINC02249 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC02249 (select a term)
intoGenLINC02249
Cancer3DLINC02249(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC02249
Genetic Testing Registry LINC02249
NextProtQ9UFV3 [Medical]
TSGene26082
GENETestsLINC02249
Target ValidationLINC02249
Huge Navigator LINC02249 [HugePedia]
snp3D : Map Gene to Disease26082
BioCentury BCIQLINC02249
ClinGenLINC02249
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26082
Clinical trialLINC02249
Miscellaneous
canSAR (ICR)LINC02249 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02249
EVEXLINC02249
GoPubMedLINC02249
iHOPLINC02249
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:16:07 CEST 2017

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