Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02250 (long intergenic non-protein coding RNA 2250)

Identity

Alias_symbol (synonym)TCONS_00023273
Other alias-
HGNC (Hugo) LINC02250
LocusID (NCBI) 105370737
Atlas_Id 79718
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 25484831 and ends at 25578791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02250   53148
Cards
Entrez_Gene (NCBI)LINC02250  105370737  long intergenic non-protein coding RNA 2250
Aliases
GeneCards (Weizmann)LINC02250
Ensembl hg19 (Hinxton)ENSG00000235731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235731 [Gene_View]  chr15:25484831-25578791 [Contig_View]  LINC02250 [Vega]
ICGC DataPortalENSG00000235731
TCGA cBioPortalLINC02250
AceView (NCBI)LINC02250
Genatlas (Paris)LINC02250
WikiGenes105370737
SOURCE (Princeton)LINC02250
Genetics Home Reference (NIH)LINC02250
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02250  -     chr15:25484831-25578791 -  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02250  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02250 - 15q11.2 [CytoView hg19]  LINC02250 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBILINC02250 [Mapview hg19]  LINC02250 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041438
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02250
Cluster EST : UnigeneHs.434752 [ NCBI ]
CGAP (NCI)Hs.434752
Alternative Splicing GalleryENSG00000235731
Gene ExpressionLINC02250 [ NCBI-GEO ]   LINC02250 [ EBI - ARRAY_EXPRESS ]   LINC02250 [ SEEK ]   LINC02250 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02250 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105370737
GTEX Portal (Tissue expression)LINC02250
Human Protein AtlasENSG00000235731-LINC02250 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02250
DMDM Disease mutations105370737
Blocks (Seattle)LINC02250
Human Protein Atlas [tissue]ENSG00000235731-LINC02250 [tissue]
Protein Interaction databases
FunCoupENSG00000235731
BioGRIDLINC02250
STRING (EMBL)LINC02250
ZODIACLINC02250
Ontologies - Pathways
Huge Navigator LINC02250 [HugePedia]
snp3D : Map Gene to Disease105370737
BioCentury BCIQLINC02250
ClinGenLINC02250
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105370737
Clinical trialLINC02250
Miscellaneous
canSAR (ICR)LINC02250 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02250
EVEXLINC02250
GoPubMedLINC02250
iHOPLINC02250
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:31:34 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.