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LINC02338 (long intergenic non-protein coding RNA 2338)

Identity

Other alias-
HGNC (Hugo) LINC02338
LocusID (NCBI) 101926897
Atlas_Id 79733
Location 13q21.1  [Link to chromosome band 13q21]
Location_base_pair Starts at 58165827 and ends at 58209483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02338   53258
Cards
Entrez_Gene (NCBI)LINC02338  101926897  long intergenic non-protein coding RNA 2338
Aliases
GeneCards (Weizmann)LINC02338
Ensembl hg19 (Hinxton)ENSG00000277448 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277448 [Gene_View]  chr13:58165827-58209483 [Contig_View]  LINC02338 [Vega]
ICGC DataPortalENSG00000277448
TCGA cBioPortalLINC02338
AceView (NCBI)LINC02338
Genatlas (Paris)LINC02338
WikiGenes101926897
SOURCE (Princeton)LINC02338
Genetics Home Reference (NIH)LINC02338
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02338  -     chr13:58165827-58209483 +  13q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02338  -     13q21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02338 - 13q21.1 [CytoView hg19]  LINC02338 - 13q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC02338 [Mapview hg19]  LINC02338 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124674
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02338
Cluster EST : UnigeneHs.640215 [ NCBI ]
CGAP (NCI)Hs.640215
Alternative Splicing GalleryENSG00000277448
Gene ExpressionLINC02338 [ NCBI-GEO ]   LINC02338 [ EBI - ARRAY_EXPRESS ]   LINC02338 [ SEEK ]   LINC02338 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02338 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101926897
GTEX Portal (Tissue expression)LINC02338
Human Protein AtlasENSG00000277448-LINC02338 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02338
DMDM Disease mutations101926897
Blocks (Seattle)LINC02338
Human Protein Atlas [tissue]ENSG00000277448-LINC02338 [tissue]
Protein Interaction databases
FunCoupENSG00000277448
BioGRIDLINC02338
STRING (EMBL)LINC02338
ZODIACLINC02338
Ontologies - Pathways
Huge Navigator LINC02338 [HugePedia]
snp3D : Map Gene to Disease101926897
BioCentury BCIQLINC02338
ClinGenLINC02338
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101926897
Clinical trialLINC02338
Miscellaneous
canSAR (ICR)LINC02338 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02338
EVEXLINC02338
GoPubMedLINC02338
iHOPLINC02338
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:32 CET 2017

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