Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC02347 (long intergenic non-protein coding RNA 2347)

Identity

Other alias-
HGNC (Hugo) LINC02347
LocusID (NCBI) 100128554
Atlas_Id 79410
Location 12q24.32  [Link to chromosome band 12q24]
Location_base_pair Starts at 126442481 and ends at 126472785 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02347   53269
Cards
Entrez_Gene (NCBI)LINC02347  100128554  long intergenic non-protein coding RNA 2347
Aliases
GeneCards (Weizmann)LINC02347
Ensembl hg19 (Hinxton)ENSG00000214043 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214043 [Gene_View]  chr12:126442481-126472785 [Contig_View]  LINC02347 [Vega]
ICGC DataPortalENSG00000214043
TCGA cBioPortalLINC02347
AceView (NCBI)LINC02347
Genatlas (Paris)LINC02347
WikiGenes100128554
SOURCE (Princeton)LINC02347
Genetics Home Reference (NIH)LINC02347
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02347  -     chr12:126442481-126472785 +  12q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02347  -     12q24.32   [Description]    (hg19-Feb_2009)
EnsemblLINC02347 - 12q24.32 [CytoView hg19]  LINC02347 - 12q24.32 [CytoView hg38]
Mapping of homologs : NCBILINC02347 [Mapview hg19]  LINC02347 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035235 BC039370 BC118583 BC121801
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02347
Cluster EST : UnigeneHs.408255 [ NCBI ]
CGAP (NCI)Hs.408255
Alternative Splicing GalleryENSG00000214043
Gene ExpressionLINC02347 [ NCBI-GEO ]   LINC02347 [ EBI - ARRAY_EXPRESS ]   LINC02347 [ SEEK ]   LINC02347 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02347 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128554
GTEX Portal (Tissue expression)LINC02347
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VFX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VFX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VFX4
Splice isoforms : SwissVarQ0VFX4
PhosPhoSitePlusQ0VFX4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02347
DMDM Disease mutations100128554
Blocks (Seattle)LINC02347
SuperfamilyQ0VFX4
Human Protein AtlasENSG00000214043
Peptide AtlasQ0VFX4
IPIIPI00785078   
Protein Interaction databases
DIP (DOE-UCLA)Q0VFX4
IntAct (EBI)Q0VFX4
FunCoupENSG00000214043
BioGRIDLINC02347
STRING (EMBL)LINC02347
ZODIACLINC02347
Ontologies - Pathways
QuickGOQ0VFX4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC02347
Atlas of Cancer Signalling NetworkLINC02347
Wikipedia pathwaysLINC02347
Orthology - Evolution
OrthoDB100128554
GeneTree (enSembl)ENSG00000214043
Phylogenetic Trees/Animal Genes : TreeFamLINC02347
HOVERGENQ0VFX4
HOGENOMQ0VFX4
Homologs : HomoloGeneLINC02347
Homology/Alignments : Family Browser (UCSC)LINC02347
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC02347 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC02347
dbVarLINC02347
ClinVarLINC02347
1000_GenomesLINC02347 
Exome Variant ServerLINC02347
ExAC (Exome Aggregation Consortium)LINC02347 (select the gene name)
Genetic variants : HAPMAP100128554
Genomic Variants (DGV)LINC02347 [DGVbeta]
DECIPHERLINC02347 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC02347 
Mutations
ICGC Data PortalLINC02347 
TCGA Data PortalLINC02347 
Broad Tumor PortalLINC02347
OASIS PortalLINC02347 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC02347
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC02347
DgiDB (Drug Gene Interaction Database)LINC02347
DoCM (Curated mutations)LINC02347 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC02347 (select a term)
intoGenLINC02347
Cancer3DLINC02347(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC02347
Genetic Testing Registry LINC02347
NextProtQ0VFX4 [Medical]
TSGene100128554
GENETestsLINC02347
Target ValidationLINC02347
Huge Navigator LINC02347 [HugePedia]
snp3D : Map Gene to Disease100128554
BioCentury BCIQLINC02347
ClinGenLINC02347
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128554
Clinical trialLINC02347
Miscellaneous
canSAR (ICR)LINC02347 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02347
EVEXLINC02347
GoPubMedLINC02347
iHOPLINC02347
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:16:18 CEST 2017

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