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LINC02380 (long intergenic non-protein coding RNA 2380)

Identity

Other alias-
HGNC (Hugo) LINC02380
LocusID (NCBI) 101928851
Atlas_Id 79615
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 57425872 and ends at 57465986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02380   53303
Cards
Entrez_Gene (NCBI)LINC02380  101928851  long intergenic non-protein coding RNA 2380
Aliases
GeneCards (Weizmann)LINC02380
Ensembl hg19 (Hinxton)ENSG00000248505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248505 [Gene_View]  ENSG00000248505 [Sequence]  chr4:57425872-57465986 [Contig_View]  LINC02380 [Vega]
ICGC DataPortalENSG00000248505
TCGA cBioPortalLINC02380
AceView (NCBI)LINC02380
Genatlas (Paris)LINC02380
WikiGenes101928851
SOURCE (Princeton)LINC02380
Genetics Home Reference (NIH)LINC02380
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02380  -     chr4:57425872-57465986 +  4q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02380  -     4q12   [Description]    (hg19-Feb_2009)
EnsemblLINC02380 - 4q12 [CytoView hg19]  LINC02380 - 4q12 [CytoView hg38]
Mapping of homologs : NCBILINC02380 [Mapview hg19]  LINC02380 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034799
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02380
Cluster EST : UnigeneHs.555072 [ NCBI ]
CGAP (NCI)Hs.555072
Alternative Splicing GalleryENSG00000248505
Gene ExpressionLINC02380 [ NCBI-GEO ]   LINC02380 [ EBI - ARRAY_EXPRESS ]   LINC02380 [ SEEK ]   LINC02380 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02380 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928851
GTEX Portal (Tissue expression)LINC02380
Human Protein AtlasENSG00000248505-LINC02380 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02380
DMDM Disease mutations101928851
Blocks (Seattle)LINC02380
Human Protein Atlas [tissue]ENSG00000248505-LINC02380 [tissue]
Protein Interaction databases
FunCoupENSG00000248505
BioGRIDLINC02380
STRING (EMBL)LINC02380
ZODIACLINC02380
Ontologies - Pathways
Huge Navigator LINC02380 [HugePedia]
snp3D : Map Gene to Disease101928851
BioCentury BCIQLINC02380
ClinGenLINC02380
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928851
Clinical trialLINC02380
Miscellaneous
canSAR (ICR)LINC02380 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02380
EVEXLINC02380
GoPubMedLINC02380
iHOPLINC02380
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:40 CEST 2018

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