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LINC02398 (long intergenic non-protein coding RNA 2398)

Identity

Other alias-
HGNC (Hugo) LINC02398
LocusID (NCBI) 100506393
Atlas_Id 79642
Location 12p12.2  [Link to chromosome band 12p12]
Location_base_pair Starts at 20014685 and ends at 20098868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02398   53325
Cards
Entrez_Gene (NCBI)LINC02398  100506393  long intergenic non-protein coding RNA 2398
Aliases
GeneCards (Weizmann)LINC02398
Ensembl hg19 (Hinxton)ENSG00000256287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256287 [Gene_View]  chr12:20014685-20098868 [Contig_View]  LINC02398 [Vega]
ICGC DataPortalENSG00000256287
TCGA cBioPortalLINC02398
AceView (NCBI)LINC02398
Genatlas (Paris)LINC02398
WikiGenes100506393
SOURCE (Princeton)LINC02398
Genetics Home Reference (NIH)LINC02398
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02398  -     chr12:20014685-20098868 +  12p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02398  -     12p12.2   [Description]    (hg19-Feb_2009)
EnsemblLINC02398 - 12p12.2 [CytoView hg19]  LINC02398 - 12p12.2 [CytoView hg38]
Mapping of homologs : NCBILINC02398 [Mapview hg19]  LINC02398 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02398
Cluster EST : UnigeneHs.658356 [ NCBI ]
CGAP (NCI)Hs.658356
Alternative Splicing GalleryENSG00000256287
Gene ExpressionLINC02398 [ NCBI-GEO ]   LINC02398 [ EBI - ARRAY_EXPRESS ]   LINC02398 [ SEEK ]   LINC02398 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02398 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506393
GTEX Portal (Tissue expression)LINC02398
Human Protein AtlasENSG00000256287-LINC02398 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02398
DMDM Disease mutations100506393
Blocks (Seattle)LINC02398
Human Protein Atlas [tissue]ENSG00000256287-LINC02398 [tissue]
Protein Interaction databases
FunCoupENSG00000256287
BioGRIDLINC02398
STRING (EMBL)LINC02398
ZODIACLINC02398
Ontologies - Pathways
Huge Navigator LINC02398 [HugePedia]
snp3D : Map Gene to Disease100506393
BioCentury BCIQLINC02398
ClinGenLINC02398
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506393
Clinical trialLINC02398
Miscellaneous
canSAR (ICR)LINC02398 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02398
EVEXLINC02398
GoPubMedLINC02398
iHOPLINC02398
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:35 CET 2017

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