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LINC02400 (long intergenic non-protein coding RNA 2400)

Identity

Other alias-
HGNC (Hugo) LINC02400
LocusID (NCBI) 101927038
Atlas_Id 79277
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 41764189 and ends at 41765581 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02400   53327
Cards
Entrez_Gene (NCBI)LINC02400  101927038  long intergenic non-protein coding RNA 2400
Aliases
GeneCards (Weizmann)LINC02400
Ensembl hg19 (Hinxton)ENSG00000257784 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257784 [Gene_View]  chr12:41764189-41765581 [Contig_View]  LINC02400 [Vega]
ICGC DataPortalENSG00000257784
TCGA cBioPortalLINC02400
AceView (NCBI)LINC02400
Genatlas (Paris)LINC02400
WikiGenes101927038
SOURCE (Princeton)LINC02400
Genetics Home Reference (NIH)LINC02400
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02400  -     chr12:41764189-41765581 +  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02400  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblLINC02400 - 12q12 [CytoView hg19]  LINC02400 - 12q12 [CytoView hg38]
Mapping of homologs : NCBILINC02400 [Mapview hg19]  LINC02400 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA429604 AA994064 AI073577
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02400
Cluster EST : UnigeneHs.98588 [ NCBI ]
CGAP (NCI)Hs.98588
Alternative Splicing GalleryENSG00000257784
Gene ExpressionLINC02400 [ NCBI-GEO ]   LINC02400 [ EBI - ARRAY_EXPRESS ]   LINC02400 [ SEEK ]   LINC02400 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02400 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927038
GTEX Portal (Tissue expression)LINC02400
Human Protein AtlasENSG00000257784-LINC02400 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02400
DMDM Disease mutations101927038
Blocks (Seattle)LINC02400
Human Protein Atlas [tissue]ENSG00000257784-LINC02400 [tissue]
Protein Interaction databases
FunCoupENSG00000257784
BioGRIDLINC02400
STRING (EMBL)LINC02400
ZODIACLINC02400
Ontologies - Pathways
Huge Navigator LINC02400 [HugePedia]
snp3D : Map Gene to Disease101927038
BioCentury BCIQLINC02400
ClinGenLINC02400
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927038
Clinical trialLINC02400
Miscellaneous
canSAR (ICR)LINC02400 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02400
EVEXLINC02400
GoPubMedLINC02400
iHOPLINC02400
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:35 CET 2017

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