Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02402 (long intergenic non-protein coding RNA 2402)

Identity

Alias_symbol (synonym)ENST00000550337.1
Other alias-
HGNC (Hugo) LINC02402
LocusID (NCBI) 101927058
Atlas_Id 79433
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 42615503 and ends at 42646498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02402   53329
Cards
Entrez_Gene (NCBI)LINC02402  101927058  long intergenic non-protein coding RNA 2402
Aliases
GeneCards (Weizmann)LINC02402
Ensembl hg19 (Hinxton)ENSG00000257510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257510 [Gene_View]  chr12:42615503-42646498 [Contig_View]  LINC02402 [Vega]
ICGC DataPortalENSG00000257510
TCGA cBioPortalLINC02402
AceView (NCBI)LINC02402
Genatlas (Paris)LINC02402
WikiGenes101927058
SOURCE (Princeton)LINC02402
Genetics Home Reference (NIH)LINC02402
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02402  -     chr12:42615503-42646498 -  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02402  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblLINC02402 - 12q12 [CytoView hg19]  LINC02402 - 12q12 [CytoView hg38]
Mapping of homologs : NCBILINC02402 [Mapview hg19]  LINC02402 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042591
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02402
Cluster EST : UnigeneHs.434238 [ NCBI ]
CGAP (NCI)Hs.434238
Alternative Splicing GalleryENSG00000257510
Gene ExpressionLINC02402 [ NCBI-GEO ]   LINC02402 [ EBI - ARRAY_EXPRESS ]   LINC02402 [ SEEK ]   LINC02402 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02402 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927058
GTEX Portal (Tissue expression)LINC02402
Human Protein AtlasENSG00000257510-LINC02402 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02402
DMDM Disease mutations101927058
Blocks (Seattle)LINC02402
Human Protein Atlas [tissue]ENSG00000257510-LINC02402 [tissue]
Protein Interaction databases
FunCoupENSG00000257510
BioGRIDLINC02402
STRING (EMBL)LINC02402
ZODIACLINC02402
Ontologies - Pathways
Huge Navigator LINC02402 [HugePedia]
snp3D : Map Gene to Disease101927058
BioCentury BCIQLINC02402
ClinGenLINC02402
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927058
Clinical trialLINC02402
Miscellaneous
canSAR (ICR)LINC02402 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02402
EVEXLINC02402
GoPubMedLINC02402
iHOPLINC02402
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:36 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.