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LINC02415 (long intergenic non-protein coding RNA 2415)

Identity

Other alias-
HGNC (Hugo) LINC02415
LocusID (NCBI) 107161159
Atlas_Id 79065
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 131296113 and ends at 131297972 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02415   53344
Cards
Entrez_Gene (NCBI)LINC02415  107161159  long intergenic non-protein coding RNA 2415
Aliases
GeneCards (Weizmann)LINC02415
Ensembl hg19 (Hinxton)ENSG00000248703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248703 [Gene_View]  chr12:131296113-131297972 [Contig_View]  LINC02415 [Vega]
ICGC DataPortalENSG00000248703
TCGA cBioPortalLINC02415
AceView (NCBI)LINC02415
Genatlas (Paris)LINC02415
WikiGenes107161159
SOURCE (Princeton)LINC02415
Genetics Home Reference (NIH)LINC02415
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02415  -     chr12:131296113-131297972 -  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02415  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblLINC02415 - 12q24.33 [CytoView hg19]  LINC02415 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBILINC02415 [Mapview hg19]  LINC02415 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042649
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02415
Cluster EST : UnigeneHs.730119 [ NCBI ]
CGAP (NCI)Hs.730119
Alternative Splicing GalleryENSG00000248703
Gene ExpressionLINC02415 [ NCBI-GEO ]   LINC02415 [ EBI - ARRAY_EXPRESS ]   LINC02415 [ SEEK ]   LINC02415 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02415 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)107161159
GTEX Portal (Tissue expression)LINC02415
Human Protein AtlasENSG00000248703-LINC02415 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02415
DMDM Disease mutations107161159
Blocks (Seattle)LINC02415
Human Protein Atlas [tissue]ENSG00000248703-LINC02415 [tissue]
Protein Interaction databases
FunCoupENSG00000248703
BioGRIDLINC02415
STRING (EMBL)LINC02415
ZODIACLINC02415
Ontologies - Pathways
Huge Navigator LINC02415 [HugePedia]
snp3D : Map Gene to Disease107161159
BioCentury BCIQLINC02415
ClinGenLINC02415
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107161159
Clinical trialLINC02415
Miscellaneous
canSAR (ICR)LINC02415 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02415
EVEXLINC02415
GoPubMedLINC02415
iHOPLINC02415
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:37 CET 2017

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