Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02417 (long intergenic non-protein coding RNA 2417)

Identity

Other alias-
HGNC (Hugo) LINC02417
LocusID (NCBI) 101930162
Atlas_Id 79700
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 3368108 and ends at 3371601 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02417   53347
Cards
Entrez_Gene (NCBI)LINC02417  101930162  long intergenic non-protein coding RNA 2417
Aliases
GeneCards (Weizmann)LINC02417
Ensembl hg19 (Hinxton)ENSG00000257048 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257048 [Gene_View]  chr12:3368108-3371601 [Contig_View]  LINC02417 [Vega]
ICGC DataPortalENSG00000257048
TCGA cBioPortalLINC02417
AceView (NCBI)LINC02417
Genatlas (Paris)LINC02417
WikiGenes101930162
SOURCE (Princeton)LINC02417
Genetics Home Reference (NIH)LINC02417
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02417  -     chr12:3368108-3371601 +  12p13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02417  -     12p13.32   [Description]    (hg19-Feb_2009)
EnsemblLINC02417 - 12p13.32 [CytoView hg19]  LINC02417 - 12p13.32 [CytoView hg38]
Mapping of homologs : NCBILINC02417 [Mapview hg19]  LINC02417 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW270974 BM052658
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02417
Cluster EST : UnigeneHs.351489 [ NCBI ]
CGAP (NCI)Hs.351489
Alternative Splicing GalleryENSG00000257048
Gene ExpressionLINC02417 [ NCBI-GEO ]   LINC02417 [ EBI - ARRAY_EXPRESS ]   LINC02417 [ SEEK ]   LINC02417 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02417 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101930162
GTEX Portal (Tissue expression)LINC02417
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02417
DMDM Disease mutations101930162
Blocks (Seattle)LINC02417
Human Protein AtlasENSG00000257048
Protein Interaction databases
FunCoupENSG00000257048
BioGRIDLINC02417
STRING (EMBL)LINC02417
ZODIACLINC02417
Ontologies - Pathways
Huge Navigator LINC02417 [HugePedia]
snp3D : Map Gene to Disease101930162
BioCentury BCIQLINC02417
ClinGenLINC02417
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101930162
Clinical trialLINC02417
Miscellaneous
canSAR (ICR)LINC02417 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02417
EVEXLINC02417
GoPubMedLINC02417
iHOPLINC02417
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:16:26 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.