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LINC02427 (long intergenic non-protein coding RNA 2427)

Identity

Other alias-
HGNC (Hugo) LINC02427
LocusID (NCBI) 105377585
Atlas_Id 79653
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 184506460 and ends at 184537583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02427   53358
Cards
Entrez_Gene (NCBI)LINC02427  105377585  long intergenic non-protein coding RNA 2427
Aliases
GeneCards (Weizmann)LINC02427
Ensembl hg19 (Hinxton)ENSG00000271538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271538 [Gene_View]  ENSG00000271538 [Sequence]  chr4:184506460-184537583 [Contig_View]  LINC02427 [Vega]
ICGC DataPortalENSG00000271538
TCGA cBioPortalLINC02427
AceView (NCBI)LINC02427
Genatlas (Paris)LINC02427
WikiGenes105377585
SOURCE (Princeton)LINC02427
Genetics Home Reference (NIH)LINC02427
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02427  -     chr4:184506460-184537583 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02427  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02427 - 4q35.1 [CytoView hg19]  LINC02427 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBILINC02427 [Mapview hg19]  LINC02427 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI582207 DA397021
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02427
Cluster EST : UnigeneHs.519127 [ NCBI ]
CGAP (NCI)Hs.519127
Alternative Splicing GalleryENSG00000271538
Gene ExpressionLINC02427 [ NCBI-GEO ]   LINC02427 [ EBI - ARRAY_EXPRESS ]   LINC02427 [ SEEK ]   LINC02427 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02427 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377585
GTEX Portal (Tissue expression)LINC02427
Human Protein AtlasENSG00000271538-LINC02427 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02427
DMDM Disease mutations105377585
Blocks (Seattle)LINC02427
Human Protein Atlas [tissue]ENSG00000271538-LINC02427 [tissue]
Protein Interaction databases
FunCoupENSG00000271538
BioGRIDLINC02427
STRING (EMBL)LINC02427
ZODIACLINC02427
Ontologies - Pathways
Huge Navigator LINC02427 [HugePedia]
snp3D : Map Gene to Disease105377585
BioCentury BCIQLINC02427
ClinGenLINC02427
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377585
Clinical trialLINC02427
Miscellaneous
canSAR (ICR)LINC02427 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02427
EVEXLINC02427
GoPubMedLINC02427
iHOPLINC02427
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:57:48 CEST 2018

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