Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02429 (long intergenic non-protein coding RNA 2429)

Identity

Other alias-
HGNC (Hugo) LINC02429
LocusID (NCBI) 105377247
Atlas_Id 78834
Location 4q13.1  [Link to chromosome band 4q13]
Location_base_pair Starts at 58984282 and ends at 59046959 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02429   53360
Cards
Entrez_Gene (NCBI)LINC02429  105377247  long intergenic non-protein coding RNA 2429
Aliases
GeneCards (Weizmann)LINC02429
Ensembl hg19 (Hinxton)ENSG00000251266 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251266 [Gene_View]  ENSG00000251266 [Sequence]  chr4:58984282-59046959 [Contig_View]  LINC02429 [Vega]
ICGC DataPortalENSG00000251266
TCGA cBioPortalLINC02429
AceView (NCBI)LINC02429
Genatlas (Paris)LINC02429
WikiGenes105377247
SOURCE (Princeton)LINC02429
Genetics Home Reference (NIH)LINC02429
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02429  -     chr4:58984282-59046959 +  4q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02429  -     4q13.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02429 - 4q13.1 [CytoView hg19]  LINC02429 - 4q13.1 [CytoView hg38]
Mapping of homologs : NCBILINC02429 [Mapview hg19]  LINC02429 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG189870 BX115989
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02429
Cluster EST : UnigeneHs.298228 [ NCBI ]
CGAP (NCI)Hs.298228
Alternative Splicing GalleryENSG00000251266
Gene ExpressionLINC02429 [ NCBI-GEO ]   LINC02429 [ EBI - ARRAY_EXPRESS ]   LINC02429 [ SEEK ]   LINC02429 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02429 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377247
GTEX Portal (Tissue expression)LINC02429
Human Protein AtlasENSG00000251266-LINC02429 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02429
DMDM Disease mutations105377247
Blocks (Seattle)LINC02429
Human Protein Atlas [tissue]ENSG00000251266-LINC02429 [tissue]
Protein Interaction databases
FunCoupENSG00000251266
BioGRIDLINC02429
STRING (EMBL)LINC02429
ZODIACLINC02429
Ontologies - Pathways
Huge Navigator LINC02429 [HugePedia]
snp3D : Map Gene to Disease105377247
BioCentury BCIQLINC02429
ClinGenLINC02429
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377247
Clinical trialLINC02429
Miscellaneous
canSAR (ICR)LINC02429 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02429
EVEXLINC02429
GoPubMedLINC02429
iHOPLINC02429
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:49 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.