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LINC02431 (long intergenic non-protein coding RNA 2431)

Identity

Other alias-
HGNC (Hugo) LINC02431
LocusID (NCBI) 100506122
Atlas_Id 79198
Location 4q34.1  [Link to chromosome band 4q34]
Location_base_pair Starts at 171040602 and ends at 171059160 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC02431   53362
Cards
Entrez_Gene (NCBI)LINC02431  100506122  long intergenic non-protein coding RNA 2431
Aliases
GeneCards (Weizmann)LINC02431
Ensembl hg19 (Hinxton)ENSG00000248872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248872 [Gene_View]  ENSG00000248872 [Sequence]  chr4:171040602-171059160 [Contig_View]  LINC02431 [Vega]
ICGC DataPortalENSG00000248872
TCGA cBioPortalLINC02431
AceView (NCBI)LINC02431
Genatlas (Paris)LINC02431
WikiGenes100506122
SOURCE (Princeton)LINC02431
Genetics Home Reference (NIH)LINC02431
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02431  -     chr4:171040602-171059160 +  4q34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02431  -     4q34.1   [Description]    (hg19-Feb_2009)
EnsemblLINC02431 - 4q34.1 [CytoView hg19]  LINC02431 - 4q34.1 [CytoView hg38]
Mapping of homologs : NCBILINC02431 [Mapview hg19]  LINC02431 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042565 BC047077
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02431
Cluster EST : UnigeneHs.434205 [ NCBI ]
CGAP (NCI)Hs.434205
Alternative Splicing GalleryENSG00000248872
Gene ExpressionLINC02431 [ NCBI-GEO ]   LINC02431 [ EBI - ARRAY_EXPRESS ]   LINC02431 [ SEEK ]   LINC02431 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02431 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506122
GTEX Portal (Tissue expression)LINC02431
Human Protein AtlasENSG00000248872-LINC02431 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02431
DMDM Disease mutations100506122
Blocks (Seattle)LINC02431
Human Protein Atlas [tissue]ENSG00000248872-LINC02431 [tissue]
Protein Interaction databases
FunCoupENSG00000248872
BioGRIDLINC02431
STRING (EMBL)LINC02431
ZODIACLINC02431
Ontologies - Pathways
Huge Navigator LINC02431 [HugePedia]
snp3D : Map Gene to Disease100506122
BioCentury BCIQLINC02431
ClinGenLINC02431
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506122
Clinical trialLINC02431
Miscellaneous
canSAR (ICR)LINC02431 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02431
EVEXLINC02431
GoPubMedLINC02431
iHOPLINC02431
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:57:49 CEST 2018

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